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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035400 ID=TCONS_00035400|Name=TCONS_00035400|organism=Clytia hemisphaerica|type=transcript|length=1663bp
agacacaaatacttcttgggttggcttgaaacatttgtcctttgacttat
tagtcttttagcaggctaaaaagtgccataaaaattacatttttttcaaa
gtttgaagtttcacagattttctattttgtcaagaatttttcgcgagcat
aaactttcgcgaatggcccttcctagaatttttaaagacatttactttcg
cgaaaagggccaaaattcgcgaaaatcgcgaaagtttctgctcgcgaaag
tttctacgcctaaagtacttcGCCGTACAACAGTTTATTTTTCAATTCCA
AGAAACCGGAATAAAGATTCTGGAAGATTTTGATTGATTATTTCTTCCTC
ACTGAACGAGGTCAAAACAGCAAGACGCGCAAAACATTTCAGAGTTAAGC
CAATATTTGGGAAAACAATCTTATGAGCTTTGAACAACATCTCATCTTGG
CCACCCTCCTCGTGATTGCTTACATAGAACCCAGTATAAACCAATTCCTT
TAAATTCCAATTTAATGAAAACGTCTGCATTTCATCATTTGGATTTACAT
TAATGTCACTTGAAATCTGTTTGCTAGTCAAGTCAAACAGAAAAAATTTC
GTCGATGAATTGTCTGGCTCGTAAAGTAAGGGAATCAAAAGACGTCCAAA
TTTTAATATTGGACTAACAGGAAAATCGACTTTAGTAATTTCAAGGTTTA
CAGGAAGTTTGAATTCTTGACTGGATCCAATATGACCCTCTAGAAGTCTT
TGCATGCAAAAGATTCCTGATTTACCGTAGAAAATGACAATCATGGAATC
ACCTTCTCCAGATTGTAATAAATACTGATAATTATACAAACTAGAATCCC
ATGGCAGTATGTATGAAAATACAATTTTCCCATTAAGATCAACTTCAAAG
ATTTCATACGTTTTAACAGATTTTGCAGAAAGAtacagcctttgttttga
acacAAGATCTTCATTGGATGGTAAATACCGGAAGAAAAAATCTCCAAAT
TGCATTCCACCCTTTTCAAATGAACCATATGCATCTTACTAACGTGCAAA
ACATCGATGCAAATCTCAGGTCGATATCGGTAATACCATCTATCTTCTCT
ATATCTACAATACCCTTGGACAAGCAGAGTTGATGATTTTCTATCAACAC
CACAACGTACAAAATAAGTCTTGTTAAATCGTTCCTTGTCATAATTCAAA
GTAATATCGGGTGTTTTGTCAATCACAATTACAGTATCATTCGATCTTTT
CAAAAGGTCAAAGATATCGAGATAATAAAGTTCCACAACAATATTAACAT
CTTCTGATGTTTGATATTGAACAGTATGGACAACTTTGCCATGGTATGGA
AACAAGAAAGACTGTCTGTCGCATTCACATTCGATAGGTATTGAGATCTT
CAATATCTTCTTTCCAATCGATTCAGTTACTGCATCAAAATCGATAACAA
CAATAGCCATATCAAATTCTTCATACTCATCCATTGCAATAATGTAATAT
TTACCAGTACCATCAAAACCTTGGTCGTAAATATCTCTGTAGAAATCTAC
GCCAAGTGAGATTGATAATTCATCTTTGCCAAGAATATTTGGAGGTACAA
ACATTGATTTTGCAATATtggtcattttttttatttttcaatttgttaTT
CTTAATCTGAAAA Run BLAST on NCBI transcript from alignment at sc0001309:62094..65496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035400 ID=TCONS_00035400|Name=TCONS_00035400|organism=Clytia hemisphaerica|type=transcript|length=3403bp|location=Sequence derived from alignment at sc0001309:62094..65496+ (Clytia hemisphaerica)
agacacaaatacttcttgggttggcttgaaacatttgtcctttgacttat
tagtcttttagcaggctaaaaagtgccataaaaattacatttttttcaaa
gtttgaagtttcacagattttctattttgtcaagaatttttcgcgagcat
aaactttcgcgaatggcccttcctagaatttttaaagacatttactttcg
cgaaaagggccaaaattcgcgaaaatcgcgaaagtttctgctcgcgaaag
tttctacgcctaaagtacttcGCCGTACAACAGTTTATTTTTCAATTCCA
AGAAACCGGAATAAAGATTCTGGAAGATTTTGATTGATTATTTCTTCCTC
ACTGAACGAGGTCAAAACAGCAAGACGCGCAAAACATTTCAGAGTTAGGT
TAATATTTGGGGAAACAATCTTATGAGCTTTGAACAACATCTCATCTTGG
CCACCCTCCTCGTGATTGCTTACATAGAACCCAGTATAAACCAATTCTTT
CAAATTCCAATTCAATGAAAATCTCTGCATTTCATCATTTGAATTTACAT
TAATCTCACTTGAAATCTGATTACTATTCAAGTCAAACAGAAAGAAATTC
GTCGATGACTTGTCCGGCTCGTAAAGCAAGGGAATCAAAAGACGTCCAAA
TTTCAATATTAGACTAACAGGAAAATTGACTTTAGTAATTTTAAGGTTCA
CAGGAAGTTTGAATTCTTGACTGGATCTAATATAACCCTCCAGAATTCTT
TGCATGCAAAAGATTCCTGACTTATCCATGAAAATGTTATTCATTGAATC
ACCTTCTCCAGATTGTAATAAAGACTGATAATTGAACAAACCAGAATCCC
ATGGCAGTATGTATGAAAATACAATCTTCCCATTAAGATCAACTTCAAAG
ATTTCGTACgttttaatagattttttagaaaaatacagACTTTCTTTTGA
ATACAAGATGCTCAGTGTATATACaataaaatctcaatatattattttga
ccatgattgtagcatcAAATCCTTCAAGAGCATATCTGTTAAATCTATAA
CGAATCGGGAAATTGGAAATCTTGTGTAGAAATGCAATGTCCTTTGTATT
CTTAGTATATCTTGCTTGGTTTTGACCAAAGCCATTATTGACAACTGGTG
CATCTTCTTTGAAGTAAGAGCAATATTCTGAGCACTTTTGAGATCTAAGT
AAAAAATCACCAATTACcttgaagaaagaaattttggcggaaagaaaatt
tggcagatttggcggatttgactgaaatccgccaaattaagttcccgcca
aattaaacatttttataatatgatctcttttaaggtgtttttgctatttt
ttcgctgttttgacgccatctcaaggttaaatttttaagcgaccgccaaa
ttaaattcccgccaaatttagttttttcgtccatccgccaaattaaattc
ccgccaaaatttcttcctttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNccgccaaattaaattcccgccaaatttagttttttcgtccatc
cgccaaattaaattcccgccaaaatttcttcctttaaggtaccaTAGCTC
ATTTGGCAAATccatattaataattttttttatcggTCTTTGTTTTCTTA
CTTTTGAACTTAAATGAAAGCATACATATTAAAACAAACCGTTATAGAAC
ATTACGCTTCGAGGTAAAAATGAGGACATGTCAAGAACATTAGgttcaaa
actcaaaaatttaaaaacatcctaaggcttcaaaaatattgaatgttctT
ATGAGAAATAAACCTCTTGACTAAGATTTAACACTGATCGAAATTTTAGT
TCAATAACATTTTGCGTTCCTTAGATACTTGAACTGATTTACGCATTAAG
CTGCATTAAGCACAAAATTCAACCGACATAAAACAGGGAAATTTaaggga
aacattttcatacattttgtttatttttctaaagcAACGGAATGTTGCTT
AGAAATACTTTGCTGTACAACAGTTTATTTTTCGATTCCAAGAAACCGGA
ATAAAGATTCTGGAAGATTTTGATTGATTATTTCTTCCTCACTAAACGAG
GTCAAAACAGCAAGACGCGCAAAACATTTCAGAGTTAAGCCAATATTTGG
GAAAACAATCTTATGAGCTTTGAACAACATCTCATCTTGGCCACCCTCCT
CGTGATTGCTTACATAGAACCCAGTATAAACCAATTCCTTTAAATTCCAA
TTTAATGAAAACGTCTGCATTTCATCATTTGGATTTACATTAATGTCACT
TGAAATCTGTTTGCTAGTCAAGTCAAACAGAAAAAATTTCGTCGATGAAT
TGTCTGGCTCGTAAAGTAAGGGAATCAAAAGACGTCCAAATTTTAATATT
GGACTAACAGGAAAATCGACTTTAGTAATTTCAAGGTTTACAGGAAGTTT
GAATTCTTGACTGGATCCAATATGACCCTCTAGAAGTCTTTGCATGCAAA
AGATTCCTGATTTACCGTAGAAAATGACAATCATGGAATCACCTTCTCCA
GATTGTAATAAATACTGATAATTATACAAACTAGAATCCCATGGCAGTAT
GTATGAAAATACAATTTTCCCATTAAGATCAACTTCAAAGATTTCATACG
TTTTAACAGATTTTGCAGAAAGAtacagcctttgttttgaacacAAGATC
TTCATTGGATGGTAAATACCGGAAGAAAAAATCTCCAAATTGCATTCCAC
CCTTTTCAAATGAACCATATGCATCTTACTAACGTGCAAAACATCGATGC
AAATCTCAGGTCGATATCGGTAATACCATCTATCTTCTCTATATCTACAA
TACCCTTGGACAAGCAGAGTTGATGATTTTCTATCAACACCACAACGTAC
AAAATAAGTCTTGTTAAATCGTTCCTTGTCATAATTCAAAGTAATATCGG
GTGTTTTGTCAATCACAATTACAGTATCATTCGATCTTTTCAAAAGGTCA
AAGATATCGAGATAATAAAGTTCCACAACAATATTAACATCTTCTGATGT
TTGATATTGAACAGTATGGACAACTTTGCCATGGTATGGAAACAAGAAAG
ACTGTCTGTCGCATTCACATTCGATAGGTATTGAGATCTTCAATATCTTC
TTTCCAATCGATTCAGTTACTGCATCAAAATCGATAACAACAATAGCCAT
ATCAAATTCTTCATACTCATCCATTGCAATAATGTAATATTTACCAGTAC
CATCAAAACCTTGGTCGTAAATATCTCTGTAGAAATCTACGCCAAGTGAG
ATTGATAATTCATCTTTGCCAAGAATATTTGGAGGTACAAACATTGATTT
TGCAATATtggtcattttttttatttttcaatttgttaTTCTTAATCTGA
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035400-exon-sc0001309-1491911889:62094..62478 | TCONS_00035400-exon-sc0001309-1491911889:62094..62478 | Clytia hemisphaerica | exon |
| TCONS_00035400-exon-sc0001309-1510915933:62094..62478 | TCONS_00035400-exon-sc0001309-1510915933:62094..62478 | Clytia hemisphaerica | exon |
| TCONS_00035400-exon-sc0001309-1575043694:62094..62478 | TCONS_00035400-exon-sc0001309-1575043694:62094..62478 | Clytia hemisphaerica | exon |
| TCONS_00035400-exon-sc0001309-1491911889:64219..65496 | TCONS_00035400-exon-sc0001309-1491911889:64219..65496 | Clytia hemisphaerica | exon |
| TCONS_00035400-exon-sc0001309-1510915933:64219..65496 | TCONS_00035400-exon-sc0001309-1510915933:64219..65496 | Clytia hemisphaerica | exon |
| TCONS_00035400-exon-sc0001309-1575043694:64219..65496 | TCONS_00035400-exon-sc0001309-1575043694:64219..65496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001309 | supercontig | sc0001309:62094..65496 + |
Blast
The following BLAST results are available for this feature:
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