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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035398 ID=TCONS_00035398|Name=TCONS_00035398|organism=Clytia hemisphaerica|type=transcript|length=3143bp
TTCTATCTTTGATCAATGTACTTGTTATTCTATCAAACGAAAGATCGATG
GAGACACAAATAATGTGAAACAGTGTTTCCAAGGGCCCGGTTTATGTGGT
TATAAACTTATAAATAGATTGAGAAAACTAAATTGATACTATAATACTGT
CCAGGGTTACGGTAGCATGGGAGAATTTTTCTATCCCACAACACAGAAAT
CCTGCAAGCAGACGGGTAATCTATATCAATCTAATTACCAGTAGTAggtt
tgttaaaaaaaagaaaaggaaaggaATATGAACAGCAAACAGAACATCAT
CTCAAACAACTTATAGATAGCAGATTGAGAAAACTAATCTGAAAACTAAT
CGGCAAAGGAATAAtgtgaatatttcaaaaaagttaaacaaagtttctac
tactactactacaaTGATTCTACAACACTTAGTATCTCTACTGGGTTTCG
TCAATAGCTACTTTTTATCTTGTCAAAGCATTACCTCACCTACAGTATTC
GAATCTTTTAataacaaagatggcggaaatTGTACCAAAAAGCAACCAGG
CTTTAATACTCTTTCAGTAGTGGAATGTTTACTACATTGCAAATTGGAAA
AAGGCGGTAAGGATGCTGTGATGGAGAATGGTGGAACCATTTGTTTTTGT
GTCGAATGCGAGACACCAGAAAAGATAACCGAGAAAAAGTCACAAGACAC
AATGGTAAACTCAACCTTTTACAGGGAATTAAAAGTTCTAAAAGtttcaG
GACCTATAGCTGCAACAAAACAACCAATATGTTACCAACCGAAAGACAAT
GAGTACGCAACGTTCAAAATGCCACACAAAGGAATTGTTCGTTCCGTAAC
ACTCATATATGTATCAGGAAAACTTCAATGTACAGGCATGGACCAAACTA
CAAACTGGGGTTGCAACACTGCCAATTACCCCTCACAGCCTGGACCTCAC
GATATAATCGTGTCAATCACAGATGACCAAGATAAAACAATATTTCCAGA
CGAATTAATGAATGCTGGTGGCTTTATTACAGTTCCCGGAGTGGATCTAG
ATAGCCAAGAGTTGACATTGGAGCCAAGTTCACCTTATGCTGTACAAGAA
CCGGACAAAGAAATGAGAGTTTGGTATAACCAAGACTTGATTGATGGTAG
TGAGCAGAACAACACTGGAGAACAATGCGTTCACGTTGTAATCAATTATG
CTTGAATTCGGTGAATCAGCAGTTTCACTATGTCTTCAATTCAGAGCGAA
TCATGTTTACGGGATGCTGAGTAAATACATACCACTTTTAAATATTCAAA
GGTCCCGAAAAGTGTAGGGGGTCCTAATAATAGGGggctttttcaaaatc
taattaACGTGGTGGGGGTCAGAGTGAAAGGAGGATCCGAAATTGTACCT
AAAAAAACCCCCAAAATGGCAATACAGCTTGTGGTACagtagctgaaaat
attttcaaaaatattagaTAAACGGTGGGGGGGGGATAAGAACGGGGAGG
GTCTGgattttctttttagatttaAAGGGACCCTTAACAAGATATTCTCC
AGAAATTTTCCCTAGGAGCAGAAATCGGAATTTTTCCGAGTATTTCTTTT
TCTAAAGCCATAAGAGGACTAAAAGACTGGAACAAAAACGTACCCTCTTG
TTGCCCTGTGGGTTTGTATATTAACCTTATTTGATAATACAACATTAATA
ATAACTGATAAAACTACACATAACATCCCAATTCTCACAACTGTTATAAG
TAAGAACAAAAACACATAAACGACTGGACGGCTATCTTCtattgtgtctt
tgaagcgaTGTTcattgccgcctgtatttcaaatcTGTTATAAataatcc
gacaatattccgtcatttttatttatttgaattacttactcgggtgagtt
agggtgtgtctagatttttaaaattcacaaatcccgaatccgcgaccaat
agcacccattctcagagattcacttatggatttttgagatgacctatacc
ttaaggtttcaggacccggttgttacgtaattaaatatcaACTTAAAagt
taattattaaagaaagtgtgaattatgacgtcatcaaattatgacgtcat
aaatcgtaaGTAGCTCTAACTCTATGAGTAAATGTCaaatctttctcaaa
tttggaccaaagatgcatcttaaTGGTGCCaaacttttcaatgaaagttt
ttttgaaaactttgacgacgtcagcaaaaaatgcaaaagatcgaaaaatg
caattttttgctgacgtcatcaaatttttccgaaattattttttctcaaa
aagttacattttagtTAGATGcatttttggttcaaatttggtAAAGATta
gaggtactttagagccctaagtggatctctgaatctggctgctattggta
gcgaaaacttagggtaaactgttaggtttCTGAGACTTCCCCTAAGTCAC
TCAagtaggtaaaaggattgatagagcttgagcattactcgtaattcaca
aaaaaaactattctaaattcttttgataagtttgcaatatatttttctac
atttttcaaCGCTGAAATgtagaatttcaactgcgtgtatatttttgaat
cacttttgtcactccaataaatttttgcatgtttttaacAAGGTGGCAAC
GAAGCTATcggtgttatcttcaaaaatacaaaggagatggatgtcgtcca
gtcgtttatatgttcatagTAAGAAATATTTCAGGATTTTGGAGGAAGTT
TTTGACATCTTTTTCGCATTTTCAAAATAACCTCCAGCGGAGACAATGAA
GCCTATAACTTTTGGAGGGGGAAATAAAGAAGGAACTTACAATTGCCaaa
tggcacacaacgttgtttcaacgtttatctaacgttcacaacgtccatat
aacgttagatgaacgttgaaacaacgttgtgtgctagctgggatTGCTAC
ACGGTGTTTCATACTGGTGCAATCTTCCTGCAGTAGGTNCAGCTGGGATT
GCTACACGGTGCTTCATGCTGGCGCAATCTTCCTGCAGTAGGtattttac
tcgaaatttttttgagttttcattTAGCACtttgtgaattttttatttac
ttcactgtatctaaaattaaaatgtaataaatgtAATAATCAG Run BLAST on NCBI protein sequence of TCONS_00035398-protein >TCONS_00035398-protein ID=TCONS_00035398-protein|Name=TCONS_00035398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MILQHLVSLLGFVNSYFLSCQSITSPTVFESFNNKDGGNCTKKQPGFNTL
SVVECLLHCKLEKGGKDAVMENGGTICFCVECETPEKITEKKSQDTMVNS
TFYRELKVLKVSGPIAATKQPICYQPKDNEYATFKMPHKGIVRSVTLIYV
SGKLQCTGMDQTTNWGCNTANYPSQPGPHDIIVSITDDQDKTIFPDELMN
AGGFITVPGVDLDSQELTLEPSSPYAVQEPDKEMRVWYNQDLIDGSEQNN
TGEQCVHVVINYA Run BLAST on NCBI transcript from alignment at sc0001309:49362..53290+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035398 ID=TCONS_00035398|Name=TCONS_00035398|organism=Clytia hemisphaerica|type=transcript|length=3929bp|location=Sequence derived from alignment at sc0001309:49362..53290+ (Clytia hemisphaerica)
TTCTATCTTTGATCAATGTACTTGTTATTCTATCAAACGAAAGATCGATG
GAGACACAAATAATGTGAAACAGTGTTTCCAAGGGCCCGGTTTATGTGGT
TATAAACTTATAAATAGATTGAGAAAACTAAATTGATACTATAATACTGT
CCAGGGTTACGGTAGCATGGGAGAATTTTTCTATCCCACAACACAGAAAT
CCTGCAAGCAGACGGGTAATCTATATCAATCTAATTACCAGTAGTAggtt
tgttaaaaaaaagaaaaggaaaggaATATGAACAGCAAACAGAACATCAT
CTCAAACAACTTATAGATAGCAGATTGAGAAAACTAATCTGAAAACTAAT
CGGCAAAGGAATAAtgtgaatatttcaaaaaagttaaacaaagtttctac
tactactactacaaTGATTCTACAACACTTAGTATCTCTACTGGGTTTCG
TCAATAGCTACTTTTTATCTTGTCAAAGCATTACCTCACCTACAGTATTC
GAATCTTTTAataacaaagatggcggaaatTGTACCAAAAAGCAACCAGG
CTTTAATACTCTTTCAGTAGTGGAATGTTTACTACATTGCAAATTGGAAA
AAGGCGGTAAGGATGCTGTGATGGAGAATGGTGGAACCATTTGTTTTTGT
GTCGAATGCGAGACACCAGAAAAGATAACCGAGAAAAAGTCACAAGACAC
AATGGTAAACTCAACCTTTTACAGGGAATTAAAAGTTCTAAAAGGTAAGG
AGTATAAGGGTGATGATTTTTTATTCGAGTCGCTAGATAATGTTGGATGT
TGGTGTTCCATACTAGGTACATCCTTAGACTGAAGACTGTATACAcgttt
ttacaagaaaaaactACATAGGGGGCcgacatagtacgtacgcactaaaa
tcgTACGCAAGCgaacgcaaatggctataccccctggtaTGTACGTACTT
TTTCCTTCAGCCccagaaaatttcgaaaacaaatcgtttggttcagacct
ttatttcatacatgaaactcaatgtttgtCAAGAAACATTTTCTtctcct
tgatgcgtataaagAAGCGTAAAAATCGAtagaaaaacaatcaaaaaagg
gctatgaaaaaattcttcctgagtacgtacattttcctttgaccccttcC
TTccctctgtacgcaagcatatgaTTTTGAgaataccccctcccccctta
gtgcgtacgtactaagTGGACAGCCCCTTGGAACATCTAAtccttcgatg
gccaaaatgttaagaacaagttaaacaCTATTTAAGGCTTTGAGAgttct
aaaacacccgatttcttaagaaaatgggcAAAATTAATCATAAAcaagtg
aaaataagaacatgttgagagcattttttggctaaaaagttaaaaaatta
agaatatctcaaggcttcaaaaatttttgattttcttataaaaaaaaacg
tgaagtGTACCACTGTCCACGGAGGAGTTGAGGTTAAAGGCAACAGATGA
CCCGCAAAAtaaccaaatttcaaaatttagtttcaGGACCTATAGCTGCA
ACAAAACAACCAATATGTTACCAACCGAAAGACAATGAGTACGCAACGTT
CAAAATGCCACACAAAGGAATTGTTCGTTCCGTAACACTCATATATGTAT
CAGGAAAACTTCAATGTACAGGCATGGACCAAACTACAAACTGGGGTTGC
AACACTGCCAATTACCCCTCACAGCCTGGACCTCACGATATAATCGTGTC
AATCACAGATGACCAAGATAAAACAATATTTCCAGACGAATTAATGAATG
CTGGTGGCTTTATTACAGTTCCCGGAGTGGATCTAGATAGCCAAGAGTTG
ACATTGGAGCCAAGTTCACCTTATGCTGTACAAGAACCGGACAAAGAAAT
GAGAGTTTGGTATAACCAAGACTTGATTGATGGTAGTGAGCAGAACAACA
CTGGAGAACAATGCGTTCACGTTGTAATCAATTATGCTTGAATTCGGTGA
ATCAGCAGTTTCACTATGTCTTCAATTCAGAGCGAATCATGTTTACGGGA
TGCTGAGTAAATACATACCACTTTTAAATATTCAAAGGTCCCGAAAAGTG
TAGGGGGTCCTAATAATAGGGggctttttcaaaatctaattaACGTGGTG
GGGGTCAGAGTGAAAGGAGGATCCGAAATTGTACCTAAAAAAACCCCCAA
AATGGCAATACAGCTTGTGGTACagtagctgaaaatattttcaaaaatat
tagaTAAACGGTGGGGGGGGGATAAGAACGGGGAGGGTCTGgattttctt
tttagatttaAAGGGACCCTTAACAAGATATTCTCCAGAAATTTTCCCTA
GGAGCAGAAATCGGAATTTTTCCGAGTATTTCTTTTTCTAAAGCCATAAG
AGGACTAAAAGACTGGAACAAAAACGTACCCTCTTGTTGCCCTGTGGGTT
TGTATATTAACCTTATTTGATAATACAACATTAATAATAACTGATAAAAC
TACACATAACATCCCAATTCTCACAACTGTTATAAGTAAGAACAAAAACA
CATAAACGACTGGACGGCTATCTTCtattgtgtctttgaagcgaTGTTca
ttgccgcctgtatttcaaatcTGTTATAAataatccgacaatattccgtc
atttttatttatttgaattacttactcgggtgagttagggtgtgtctaga
tttttaaaattcacaaatcccgaatccgcgaccaatagcacccattctca
gagattcacttatggatttttgagatgacctataccttaaggtttcagga
cccggttgttacgtaattaaatatcaACTTAAAagttaattattaaagaa
agtgtgaattatgacgtcatcaaattatgacgtcataaatcgtaaGTAGC
TCTAACTCTATGAGTAAATGTCaaatctttctcaaatttggaccaaagat
gcatcttaaTGGTGCCaaacttttcaatgaaagtttttttgaaaactttg
acgacgtcagcaaaaaatgcaaaagatcgaaaaatgcaattttttgctga
cgtcatcaaatttttccgaaattattttttctcaaaaagttacattttag
tTAGATGcatttttggttcaaatttggtAAAGATtagaggtactttagag
ccctaagtggatctctgaatctggctgctattggtagcgaaaacttaggg
taaactgttaggtttCTGAGACTTCCCCTAAGTCACTCAagtaggtaaaa
ggattgatagagcttgagcattactcgtaattcacaaaaaaaactattct
aaattcttttgataagtttgcaatatatttttctacatttttcaaCGCTG
AAATgtagaatttcaactgcgtgtatatttttgaatcacttttgtcactc
caataaatttttgcatgtttttaacAAGGTGGCAACGAAGCTATcggtgt
tatcttcaaaaatacaaaggagatggatgtcgtccagtcgtttatatgtt
catagTAAGAAATATTTCAGGATTTTGGAGGAAGTTTTTGACATCTTTTT
CGCATTTTCAAAATAACCTCCAGCGGAGACAATGAAGCCTATAACTTTTG
GAGGGGGAAATAAAGAAGGAACTTACAATTGCCaaatggcacacaacgtt
gtttcaacgtttatctaacgttcacaacgtccatataacgttagatgaac
gttgaaacaacgttgtgtgctagctgggatTGCTACACGGTGTTTCATAC
TGGTGCAATCTTCCTGCAGTAGGTNCAGCTGGGATTGCTACACGGTGCTT
CATGCTGGCGCAATCTTCCTGCAGTAGGtattttactcgaaatttttttg
agttttcattTAGCACtttgtgaattttttatttacttcactgtatctaa
aattaaaatgtaataaatgtAATAATCAG Coding sequence (CDS) from alignment at sc0001309:49362..53290+ >TCONS_00035398 ID=TCONS_00035398|Name=TCONS_00035398|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0001309:49362..53290+ (Clytia hemisphaerica)
aTGATTCTACAACACTTAGTATCTCTACTGGGTTTCGTCAATAGCTACTT
TTTATCTTGTCAAAGCATTACCTCACCTACAGTATTCGAATCTTTTAata
acaaagatggcggaaatTGTACCAAAAAGCAACCAGGCTTTAATACTCTT
TCAGTAGTGGAATGTTTACTACATTGCAAATTGGAAAAAGGCGGTAAGGA
TGCTGTGATGGAGAATGGTGGAACCATTTGTTTTTGTGTCGAATGCGAGA
CACCAGAAAAGATAACCGAGAAAAAGTCACAAGACACAATGGTAAACTCA
ACCTTTTACAGGGAATTAAAAGTTCTAAAAGtttcaGGACCTATAGCTGC
AACAAAACAACCAATATGTTACCAACCGAAAGACAATGAGTACGCAACGT
TCAAAATGCCACACAAAGGAATTGTTCGTTCCGTAACACTCATATATGTA
TCAGGAAAACTTCAATGTACAGGCATGGACCAAACTACAAACTGGGGTTG
CAACACTGCCAATTACCCCTCACAGCCTGGACCTCACGATATAATCGTGT
CAATCACAGATGACCAAGATAAAACAATATTTCCAGACGAATTAATGAAT
GCTGGTGGCTTTATTACAGTTCCCGGAGTGGATCTAGATAGCCAAGAGTT
GACATTGGAGCCAAGTTCACCTTATGCTGTACAAGAACCGGACAAAGAAA
TGAGAGTTTGGTATAACCAAGACTTGATTGATGGTAGTGAGCAGAACAAC
ACTGGAGAACAATGCGTTCACGTTGTAATCAATTATGCTTGAaTGATTCT
ACAACACTTAGTATCTCTACTGGGTTTCGTCAATAGCTACTTTTTATCTT
GTCAAAGCATTACCTCACCTACAGTATTCGAATCTTTTAataacaaagat
ggcggaaatTGTACCAAAAAGCAACCAGGCTTTAATACTCTTTCAGTAGT
GGAATGTTTACTACATTGCAAATTGGAAAAAGGCGGTAAGGATGCTGTGA
TGGAGAATGGTGGAACCATTTGTTTTTGTGTCGAATGCGAGACACCAGAA
AAGATAACCGAGAAAAAGTCACAAGACACAATGGTAAACTCAACCTTTTA
CAGGGAATTAAAAGTTCTAAAAGtttcaGGACCTATAGCTGCAACAAAAC
AACCAATATGTTACCAACCGAAAGACAATGAGTACGCAACGTTCAAAATG
CCACACAAAGGAATTGTTCGTTCCGTAACACTCATATATGTATCAGGAAA
ACTTCAATGTACAGGCATGGACCAAACTACAAACTGGGGTTGCAACACTG
CCAATTACCCCTCACAGCCTGGACCTCACGATATAATCGTGTCAATCACA
GATGACCAAGATAAAACAATATTTCCAGACGAATTAATGAATGCTGGTGG
CTTTATTACAGTTCCCGGAGTGGATCTAGATAGCCAAGAGTTGACATTGG
AGCCAAGTTCACCTTATGCTGTACAAGAACCGGACAAAGAAATGAGAGTT
TGGTATAACCAAGACTTGATTGATGGTAGTGAGCAGAACAACACTGGAGA
ACAATGCGTTCACGTTGTAATCAATTATGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035398-exon-sc0001309-1491911889:49362..50105 | TCONS_00035398-exon-sc0001309-1491911889:49362..50105 | Clytia hemisphaerica | exon |
| TCONS_00035398-exon-sc0001309-1510915933:49362..50105 | TCONS_00035398-exon-sc0001309-1510915933:49362..50105 | Clytia hemisphaerica | exon |
| TCONS_00035398-exon-sc0001309-1575043694:49362..50105 | TCONS_00035398-exon-sc0001309-1575043694:49362..50105 | Clytia hemisphaerica | exon |
| TCONS_00035398-exon-sc0001309-1491911889:50892..53290 | TCONS_00035398-exon-sc0001309-1491911889:50892..53290 | Clytia hemisphaerica | exon |
| TCONS_00035398-exon-sc0001309-1510915933:50892..53290 | TCONS_00035398-exon-sc0001309-1510915933:50892..53290 | Clytia hemisphaerica | exon |
| TCONS_00035398-exon-sc0001309-1575043694:50892..53290 | TCONS_00035398-exon-sc0001309-1575043694:50892..53290 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001309 | supercontig | sc0001309:49362..53290 + |
Blast
The following BLAST results are available for this feature:
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