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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035397 ID=TCONS_00035397|Name=TCONS_00035397|organism=Clytia hemisphaerica|type=transcript|length=1502bp
CCTCAATATGCCCTCCGTGCGCTTCACCCATTTCGTCAGCTTCGTAGTCG
TCACTGTCAAATTTTGACTTCAATAGACGTTTATTCCCTTGCTGGCATAC
CCAACAAAGGTCTCCCATCGGCTTAGTAATGATTACGTTTGGTAGTTGGG
ATTTCCATAACTCGCAAAAAGAACTAAAGCCCATAAATTCGAAGCCATTC
CCCTCAAACAAGGCCTTGTATTGGTTGTGCACGCTCTCTTTCGTTTTAAA
CGAGGgtattagtaaaagtttagcaTCATCATCGCTTGACGGCCATTTCT
CTCGTCTTGAAACTAAAGGCATTGTGTGGGCGTCGTTTATGGTGTTGCCA
TGTACACGCAAAACTGGGCCATTCTCGTGAAAATGTTTAAACATTGTCGT
CAAAAGAGTTTTGGAAATGTCATagcaaaacatgaaaaattttcGGCAAA
TACGAGTTCCGTATANGAAATGTCATagcaaaacatgaaaaatttccGGC
AAATACGAGTTCCGTATAGAGAATATTGAATACTATCACCCGTTTTCGAT
TTTTCGGATAGAAGGAAACCCATTAACATCACATCTCTTTCACTTTCATC
CAATTCCAATATACTGTTCCTTAATTTACGAATATCTTCCTTAGAGAAGC
TTTCAAGACATTGATTTCGACACCTAACTTACAGACACAACCATCACGAA
AAAATTGTCTAATAATCCTTCCTCCTCAAAATCTAACATGCGTTTTTCAG
CCATGATTACAGCAGAGATtataacaaattaaatttgaaatggCGAACTC
ATTGCATTTTTCTGACATGACAGAAAACATACAAAGCAGTCTacattgaa
aaatttattttcggaCGTAATAGTATTGTTAAAAAATTCTtacaataata
aataaattttcttcgGACGTAAAAGTAGCTACTCAACTAAACTttaaaat
tcgaacgttcgaatgttcaGTTGCGGACTTACACGTGACCATGCAGAACA
ATGAACAATGAAATGTAGAGTGTTCGATAAATACGTCAATCAAATTCGAA
CGTGATGTCAAACGTAAATTTAAATTCTATAAAAGAGCGAAAGTGAAACA
ATCACTCTCTCTCACTTTACGGAGCTGAAGCTTAGAAATAAGAAATCTAA
CTTTATTTTTAGATctaaatctttttctttcattatgTCAAGAAGGCCTT
TAGCACCAAAATTTGCTTTGATGCATTTTGAATGTGATAATTAAATTAGT
GTCGTATTGACAAAAAGTGTCGATTGGCTGGAATTTGGAAAACTTGGTCA
TTGTAAAGATGGATCTCAAAGGCCGATTGGACGGGTTTTAAAAATGGCAG
GTACCTATCTTGATCACGAGAAGTAATTCGAGTTCCCATCTGGGACCGTG
CGTAAATGATCAAGTTATTCTTATGTTCTACGCTGTTTTAACTTAGGATG
AAAAATAATTCGATGAGCCGTTCCTGGATCATTTCGAACCACGCGTAAAG
AA Run BLAST on NCBI protein sequence of TCONS_00035397-protein >TCONS_00035397-protein ID=TCONS_00035397-protein|Name=TCONS_00035397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MFCYDISKTLLTTMFKHFHENGPVLRVHGNTINDAHTMPLVSRREKWPSS
DDDAKLLLIPSFKTKESVHNQYKALFEGNGFEFMGFSSFCELWKSQLPNV
IITKPMGDLCWVCQQGNKRLLKSKFDSDDYEADEMGEAHGGHIE Run BLAST on NCBI transcript from alignment at sc0001308:53772..55273 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035397 ID=TCONS_00035397|Name=TCONS_00035397|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at sc0001308:53772..55273 (Clytia hemisphaerica)
TTCTTTACGCGTGGTTCGAAATGATCCAGGAACGGCTCATCGAATTATTT
TTCATCCTAAGTTAAAACAGCGTAGAACATAAGAATAACTTGATCATTTA
CGCACGGTCCCAGATGGGAACTCGAATTACTTCTCGTGATCAAGATAGGT
ACCTGCCATTTTTAAAACCCGTCCAATCGGCCTTTGAGATCCATCTTTAC
AATGACCAAGTTTTCCAAATTCCAGCCAATCGACACTTTTTGTCAATACG
ACACTAATTTAATTATCACATTCAAAATGCATCAAAGCAAATTTTGGTGC
TAAAGGCCTTCTTGAcataatgaaagaaaaagatttagATCTAAAAATAA
AGTTAGATTTCTTATTTCTAAGCTTCAGCTCCGTAAAGTGAGAGAGAGTG
ATTGTTTCACTTTCGCTCTTTTATAGAATTTAAATTTACGTTTGACATCA
CGTTCGAATTTGATTGACGTATTTATCGAACACTCTACATTTCATTGTTC
ATTGTTCTGCATGGTCACGTGTAAGTCCGCAACtgaacattcgaacgttc
gaattttaaAGTTTAGTTGAGTAGCTACTTTTACGTCcgaagaaaattta
tttattattgtaAGAATTTTTTAACAATACTATTACGtccgaaaataaat
ttttcaatgtAGACTGCTTTGTATGTTTTCTGTCATGTCAGAAAAATGCA
ATGAGTTCGccatttcaaatttaatttgttataATCTCTGCTGTAATCAT
GGCTGAAAAACGCATGTTAGATTTTGAGGAGGAAGGATTATTAGACAATT
TTTTCGTGATGGTTGTGTCTGTAAGTTAGGTGTCGAAATCAATGTCTTGA
AAGCTTCTCTAAGGAAGATATTCGTAAATTAAGGAACAGTATATTGGAAT
TGGATGAAAGTGAAAGAGATGTGATGTTAATGGGTTTCCTTCTATCCGAA
AAATCGAAAACGGGTGATAGTATTCAATATTCTCTATACGGAACTCGTAT
TTGCCggaaatttttcatgttttgctATGACATTTCNTATACGGAACTCG
TATTTGCCgaaaatttttcatgttttgctATGACATTTCCAAAACTCTTT
TGACGACAATGTTTAAACATTTTCACGAGAATGGCCCAGTTTTGCGTGTA
CATGGCAACACCATAAACGACGCCCACACAATGCCTTTAGTTTCAAGACG
AGAGAAATGGCCGTCAAGCGATGATGAtgctaaacttttactaatacCCT
CGTTTAAAACGAAAGAGAGCGTGCACAACCAATACAAGGCCTTGTTTGAG
GGGAATGGCTTCGAATTTATGGGCTTTAGTTCTTTTTGCGAGTTATGGAA
ATCCCAACTACCAAACGTAATCATTACTAAGCCGATGGGAGACCTTTGTT
GGGTATGCCAGCAAGGGAATAAACGTCTATTGAAGTCAAAATTTGACAGT
GACGACTACGAAGCTGACGAAATGGGTGAAGCGCACGGAGGGCATATTGA
GG Coding sequence (CDS) from alignment at sc0001308:53772..55273 >TCONS_00035397 ID=TCONS_00035397|Name=TCONS_00035397|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0001308:53772..55273 (Clytia hemisphaerica)
atgttttgctATGACATTTCCAAAACTCTTTTGACGACAATGTTTAAACA
TTTTCACGAGAATGGCCCAGTTTTGCGTGTACATGGCAACACCATAAACG
ACGCCCACACAATGCCTTTAGTTTCAAGACGAGAGAAATGGCCGTCAAGC
GATGATGAtgctaaacttttactaatacCCTCGTTTAAAACGAAAGAGAG
CGTGCACAACCAATACAAGGCCTTGTTTGAGGGGAATGGCTTCGAATTTA
TGGGCTTTAGTTCTTTTTGCGAGTTATGGAAATCCCAACTACCAAACGTA
ATCATTACTAAGCCGATGGGAGACCTTTGTTGGGTATGCCAGCAAGGGAA
TAAACGTCTATTGAAGTCAAAATTTGACAGTGACGACTACGAAGCTGACG
AAATGGGTGAAGCGCACGGAGGGCATATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035397-exon-sc0001308-1491911889:53772..55273 | TCONS_00035397-exon-sc0001308-1491911889:53772..55273 | Clytia hemisphaerica | exon |
| TCONS_00035397-exon-sc0001308-1510915933:53772..55273 | TCONS_00035397-exon-sc0001308-1510915933:53772..55273 | Clytia hemisphaerica | exon |
| TCONS_00035397-exon-sc0001308-1575043694:53772..55273 | TCONS_00035397-exon-sc0001308-1575043694:53772..55273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001308 | supercontig | sc0001308:53772..55273 . |
Blast
The following BLAST results are available for this feature:
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