TCONS_00035396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035396
Unique NameTCONS_00035396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035396 ID=TCONS_00035396|Name=TCONS_00035396|organism=Clytia hemisphaerica|type=transcript|length=403bp
CCTAGGAGAACGAGAATAGCAGACCTTTATCAGGAATCAAAAGTGTCATC
AATAGAAAACAGATTAAAAACACTTGCAAAAAACTGGCTAACCAAAAGTG
TTGGAGTTCTCCACCACCCTCTAAACGTAAACAACTTCATGACTAGACAA
AACCCTGAAAAGCCAACACTATTTGAAAGATTAActtctttataaaaatc
aacTCTCTTAGAAATATATATATCTTTTTCTTCTTATCTCATATACTCTC
TTTtattctcttttattttttccttttcttgtaTTTATAATCatatacaa
aatatttattaCTTTCAACATAATCTTGAGTAACTCAATGTTACTCTTGA
TTTTTATTATGCACCTTAATATGTATTTTCAAGCATTCACTTTTATTACG
TTA
Run BLAST on NCBI

transcript from alignment at sc0001308:29899..30301

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035396 ID=TCONS_00035396|Name=TCONS_00035396|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at sc0001308:29899..30301 (Clytia hemisphaerica)
TAACGTAATAAAAGTGAATGCTTGAAAATACATATTAAGGTGCATAATAA
AAATCAAGAGTAACATTGAGTTACTCAAGATTATGTTGAAAGtaataaat
attttgtatatGATTATAAAtacaagaaaaggaaaaaataaaagagaata
AAAGAGAGTATATGAGATAAGAAGAAAAAGATATATATATTTCTAAGAGA
gttgatttttataaagaagTTAATCTTTCAAATAGTGTTGGCTTTTCAGG
GTTTTGTCTAGTCATGAAGTTGTTTACGTTTAGAGGGTGGTGGAGAACTC
CAACACTTTTGGTTAGCCAGTTTTTTGCAAGTGTTTTTAATCTGTTTTCT
ATTGATGACACTTTTGATTCCTGATAAAGGTCTGCTATTCTCGTTCTCCT
AGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020687XLOC_020687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035396-exon-sc0001308-1491911889:29899..30301TCONS_00035396-exon-sc0001308-1491911889:29899..30301Clytia hemisphaericaexon
TCONS_00035396-exon-sc0001308-1510915933:29899..30301TCONS_00035396-exon-sc0001308-1510915933:29899..30301Clytia hemisphaericaexon
TCONS_00035396-exon-sc0001308-1575043694:29899..30301TCONS_00035396-exon-sc0001308-1575043694:29899..30301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001308supercontigsc0001308:29899..30301 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228312	0	0.752338	0.989091	0.873824	0.925017	0	1.10056	0.210009	0	0	0.495871	0.121624	0.495514	0.314444	0.362887	0.206963	0.756621	0	0.502197	0.658733	0.965255	0.565224	0.700306	0.392689	1.22663	1.11003	0.910244	0.867984	0.348275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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