TCONS_00035390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035390
Unique NameTCONS_00035390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035390 ID=TCONS_00035390|Name=TCONS_00035390|organism=Clytia hemisphaerica|type=transcript|length=854bp
GGAGGATGGTCGACGTGTTGACGATGAGGGTTGTTTTGAGCGATGGAACG
ATGAAGCTGAACGTAAGACTTTGGCTTCGTCATTAGACTGGATACTTTCG
AGGAGGGAGTCCATTGCTTGCGATATTTCAGGTTTTATGGAAGCTAATGT
TCGAGAGCGTAATTCTGTACCATATCTCTGTTTGACGAGAGTAGGTAAGT
CCTTGTGTAGCAAATGGAGCCACTGTAAAACAATAAAGTTCTCAAGGGTT
GGTGTTAATTCCTCTTCTTCTCCAATGGCTTCGCCATGGTGGGTTAATCC
ACTGTTCTCGTTCAAAATACTGTCTTCAACAAAGGTCATTAAACGTTGAA
AAGGGTCCTCTGGTCTTTCATCAGGTTTTAACTGGATGTTGATTAAGTCG
ATAAAGTGTGCACCGGTAGACTGAAAACCATAGTGGGCGCGGATGGATTG
CCAGATTGATTCGACTGAGGTGATGTTTTTGACGATGGTGTTGCACGAAA
TTATGGGGCAAAAATTTGCGATTTGTCCCAATAATAAATCTAGTTGGGCT
ACCTTCTGGGCAGCAGTTCTACGGTTGGGGACGTCTTCTGCATCATCTTG
GAAGCCACGAAGGGGAGCTGCTCTGGTTTTCTTTAACCAAGATTTTGTCT
CCAACTTTCAAACGAAGTTATAGTTTCATTGCGAGTGAGGCTCCACTGTT
TAGGAGCTCTGTTGTTCGCCATGATGATATAGAATGTTTGTTTGCATAAA
AGCAGTGAGTCTTGAAGACGATGGTGTGAGTATGATTCGAATCTATCATC
ACGGTAATTAAGAAGTGGAGACGTGCGTGTTTGTTTACTAACACAAGATA
TAAT
Run BLAST on NCBI

protein sequence of TCONS_00035390-protein

>TCONS_00035390-protein ID=TCONS_00035390-protein|Name=TCONS_00035390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MTFVEDSILNENSGLTHHGEAIGEEEELTPTLENFIVLQWLHLLHKDLPT
LVKQRYGTELRSRTLASIKPEISQAMDSLLESIQSNDEAKVLRSASSFHR
SKQPSSSTRRPSS
Run BLAST on NCBI

transcript from alignment at sc0001306:63904..64757

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035390 ID=TCONS_00035390|Name=TCONS_00035390|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0001306:63904..64757 (Clytia hemisphaerica)
ATTATATCTTGTGTTAGTAAACAAACACGCACGTCTCCACTTCTTAATTA
CCGTGATGATAGATTCGAATCATACTCACACCATCGTCTTCAAGACTCAC
TGCTTTTATGCAAACAAACATTCTATATCATCATGGCGAACAACAGAGCT
CCTAAACAGTGGAGCCTCACTCGCAATGAAACTATAACTTCGTTTGAAAG
TTGGAGACAAAATCTTGGTTAAAGAAAACCAGAGCAGCTCCCCTTCGTGG
CTTCCAAGATGATGCAGAAGACGTCCCCAACCGTAGAACTGCTGCCCAGA
AGGTAGCCCAACTAGATTTATTATTGGGACAAATCGCAAATTTTTGCCCC
ATAATTTCGTGCAACACCATCGTCAAAAACATCACCTCAGTCGAATCAAT
CTGGCAATCCATCCGCGCCCACTATGGTTTTCAGTCTACCGGTGCACACT
TTATCGACTTAATCAACATCCAGTTAAAACCTGATGAAAGACCAGAGGAC
CCTTTTCAACGTTTAATGACCTTTGTTGAAGACAGTATTTTGAACGAGAA
CAGTGGATTAACCCACCATGGCGAAGCCATTGGAGAAGAAGAGGAATTAA
CACCAACCCTTGAGAACTTTATTGTTTTACAGTGGCTCCATTTGCTACAC
AAGGACTTACCTACTCTCGTCAAACAGAGATATGGTACAGAATTACGCTC
TCGAACATTAGCTTCCATAAAACCTGAAATATCGCAAGCAATGGACTCCC
TCCTCGAAAGTATCCAGTCTAATGACGAAGCCAAAGTCTTACGTTCAGCT
TCATCGTTCCATCGCTCAAAACAACCCTCATCGTCAACACGTCGACCATC
CTCC

Coding sequence (CDS) from alignment at sc0001306:63904..64757

>TCONS_00035390 ID=TCONS_00035390|Name=TCONS_00035390|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0001306:63904..64757 (Clytia hemisphaerica)
ATGACCTTTGTTGAAGACAGTATTTTGAACGAGAACAGTGGATTAACCCA
CCATGGCGAAGCCATTGGAGAAGAAGAGGAATTAACACCAACCCTTGAGA
ACTTTATTGTTTTACAGTGGCTCCATTTGCTACACAAGGACTTACCTACT
CTCGTCAAACAGAGATATGGTACAGAATTACGCTCTCGAACATTAGCTTC
CATAAAACCTGAAATATCGCAAGCAATGGACTCCCTCCTCGAAAGTATCC
AGTCTAATGACGAAGCCAAAGTCTTACGTTCAGCTTCATCGTTCCATCGC
TCAAAACAACCCTCATCGTCAACACGTCGACCATCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020682XLOC_020682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035390-exon-sc0001306-1491911889:63904..64757TCONS_00035390-exon-sc0001306-1491911889:63904..64757Clytia hemisphaericaexon
TCONS_00035390-exon-sc0001306-1510915933:63904..64757TCONS_00035390-exon-sc0001306-1510915933:63904..64757Clytia hemisphaericaexon
TCONS_00035390-exon-sc0001306-1575043694:63904..64757TCONS_00035390-exon-sc0001306-1575043694:63904..64757Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035390-proteinTCONS_00035390-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001306supercontigsc0001306:63904..64757 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.818772	0.390395	0.706765	0.47601	1.84057	1.02452	0.425299	1.24863	0.506394	1.08097	1.58662	0.359586	0.937359	0.693296	0.756198	0.528341	0.496745	0.431568	0.512852	0.159747	0.803934	0.936362	0.469719	0.440483	1.68802	1.2567	0.395109	0.390371	0.445469	0.35819
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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