TCONS_00035387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035387
Unique NameTCONS_00035387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035387 ID=TCONS_00035387|Name=TCONS_00035387|organism=Clytia hemisphaerica|type=transcript|length=838bp
ATATGGAGCACAACCCTTTCATAACAAATGGaccaggctggacttaaaaa
ggttggtttgtcaatCCCCAAACCCTAGATTTTGAAGAtgggtaggaaaa
ttttttttttttttcaaggtttagTTCCTAGTTTAGTTGTTCCCTTCTTA
GCCTCAATTGGACTGCATGGAATTTCcacaaaaatgttagaaaactgCTG
AAAATCACATCCTGAATGCAACATATCAAGTGCAAATAAAGGGGGTTttt
aggggttcgaaataccgttttcacGTCTAAATTTTTGCTGTATCCTGGaa
tcttgaaaattgaaaaaaataataacaccgtcacaccggtttgtacaagT
TCAAATACCGGctaatgacaaaaaaataaggccaaataccgtttTCCCTT
CTTTTTTTTCGACTTAAAAATGGCCAACCCCCGTCACACCAtgaaagtac
aaaccccccaaTAAAGGACGGCTATTCAAGTTTCCATTGAACCTATTTCT
ATATCTATTTATTTAAACTTTACAAAAGTCTCGTAAAACTCGTAAACCAT
GTCTAGGTCTGTTTCTTTAGAATTTTAGAAATACAGTATTTATTGTGTTG
CAATACATTCACTAGAAACAACAATCATAGAAAGAAAATATCTAGTCACA
GTCCCCTGAAAAGGCATTAATGTGATATTGCCAGAGGCATCTCTCAGAAA
AAAGTGACAGACTGCTGAAAAAGTGCCAAAGAAAGCATCATGTGAAAGAG
TCTCACAAAAACTATTCCAGCTAAGACAAAAAGGACATTTTCAGTTCTAA
TATTCAAGTGGCTAAACTCTGAAAAGTAGCTAAATTTG
Run BLAST on NCBI

transcript from alignment at sc0001306:31276..32113

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035387 ID=TCONS_00035387|Name=TCONS_00035387|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at sc0001306:31276..32113 (Clytia hemisphaerica)
CAAATTTAGCTACTTTTCAGAGTTTAGCCACTTGAATATTAGAACTGAAA
ATGTCCTTTTTGTCTTAGCTGGAATAGTTTTTGTGAGACTCTTTCACATG
ATGCTTTCTTTGGCACTTTTTCAGCAGTCTGTCACTTTTTTCTGAGAGAT
GCCTCTGGCAATATCACATTAATGCCTTTTCAGGGGACTGTGACTAGATA
TTTTCTTTCTATGATTGTTGTTTCTAGTGAATGTATTGCAACACAATAAA
TACTGTATTTCTAAAATTCTAAAGAAACAGACCTAGACATGGTTTACGAG
TTTTACGAGACTTTTGTAAAGTTTAAATAAATAGATATAGAAATAGGTTC
AATGGAAACTTGAATAGCCGTCCTTTAttggggggtttgtactttcaTGG
TGTGACGGGGGTTGGCCATTTTTAAGTCGAAAAAAAAGAAGGGAaaacgg
tatttggccttatttttttgtcattagCCGGTATTTGAActtgtacaaac
cggtgtgacggtgttattatttttttcaattttcaagattCCAGGATACA
GCAAAAATTTAGACgtgaaaacggtatttcgaacccctaaaAACCCCCTT
TATTTGCACTTGATATGTTGCATTCAGGATGTGATTTTCAGcagttttct
aacatttttgtgGAAATTCCATGCAGTCCAATTGAGGCTAAGAAGGGAAC
AACTAAACTAGGAActaaaccttgaaaaaaaaaaaaaattttcctaccca
TCTTCAAAATCTAGGGTTTGGGGattgacaaaccaacctttttaagtcca
gcctggtCCATTTGTTATGAAAGGGTTGTGCTCCATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020679XLOC_020679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035387-exon-sc0001306-1491911889:31276..32113TCONS_00035387-exon-sc0001306-1491911889:31276..32113Clytia hemisphaericaexon
TCONS_00035387-exon-sc0001306-1510915933:31276..32113TCONS_00035387-exon-sc0001306-1510915933:31276..32113Clytia hemisphaericaexon
TCONS_00035387-exon-sc0001306-1575043694:31276..32113TCONS_00035387-exon-sc0001306-1575043694:31276..32113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001306supercontigsc0001306:31276..32113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.38955	2.94503	11.5597	16.8804	8.70885	5.84234	4.47826	4.68576	3.21225	3.0176	0.782488	2.53593	1.66083	0.788828	1.71418	1.61031	2.37178	1.32667	1.15805	1.13421	1.4255	2.66353	1.43248	1.34468	1.32906	1.60423	1.71221	1.71419	1.33098	0.584527
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top