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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035384 ID=TCONS_00035384|Name=TCONS_00035384|organism=Clytia hemisphaerica|type=transcript|length=981bp
TTCTCTGGAATGAAACCAACCGAAGAATTATCAGAAGATGGTTCAAGCAT
CTCTGTTGGAGGAATGAGATGGTTCCCTGAAACCGACGAACTCACACTCA
GTATCTCGGACTTCAATTTCTCCAAGAAGAGGAGGggaaagaaatcttca
aaagcaTCTAACATCATCCCGGACAAGCTAACACGTAGAGATTGTGCATC
CAAAGTTGCAGAAATTTTCGATCTGACAGGGAAAATGTCACCAATCGTTG
CTTCAATGAAACTCGATCTTCACGAATTAACAGCACGACAACTTGACTGG
AATGATATCATTCCTGATGAACTCCGTCAAACGTGGTTGGACAACTTCAA
AATGATGAAAGACCTCGGAGAAGTACGTTTCAAACGAGCCATCGTACCAG
AAGATGCTCTCAACACAGACATACACACATTGGACTTTGGCGACTCAAGC
AAATCATTAATCTGCACCTGCATTTATGCACGATTCCAACGGAAAAATGG
TTCATTCTCCTGCCAACTTGTGTTTGCAAGAACACGTACAGTACCAAAAG
GACTCTCATTGCCACGTGCTGAACTACTTGCCGCACTTATCAACACTCAC
ACTGGTGAAGTAGTTCGTAGATCATTTGGAACACTACACAAGTCCTCACT
CAAATTCACCGATTCACAAATTGCTCTCCATTGGATCTCCAATGATGAAA
AGCCACTGAAGTTGTGGGTCAGAAACAACATGATTGCAGATCTTGGAACC
AGACGTGGTGCAACCATTGCTGATGTCAGCCAAGACTCAAAGTTGATGAA
CGGTATGGATCTTGCCAACAACACAAGTTTCTGTCGTTGGACGTTACACT
GACACCATGAAAGACCTCACATCAACAACATTTATGGTTCCAATCCTAGA
CAACAACTCACCAATTGCTTACAGCATTGCTTCAGAAGTTCATTGGCACG
ATCCAAACACTCAGCATTGTGGCATCGAAAC Run BLAST on NCBI protein sequence of TCONS_00035384-protein >TCONS_00035384-protein ID=TCONS_00035384-protein|Name=TCONS_00035384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
FSGMKPTEELSEDGSSISVGGMRWFPETDELTLSISDFNFSKKRRGKKSS
KASNIIPDKLTRRDCASKVAEIFDLTGKMSPIVASMKLDLHELTARQLDW
NDIIPDELRQTWLDNFKMMKDLGEVRFKRAIVPEDALNTDIHTLDFGDSS
KSLICTCIYARFQRKNGSFSCQLVFARTRTVPKGLSLPRAELLAALINTH
TGEVVRRSFGTLHKSSLKFTDSQIALHWISNDEKPLKLWVRNNMIADLGT
RRGATIADVSQDSKLMNGMDLANNTSFCRWTLH Run BLAST on NCBI transcript from alignment at sc0001305:67145..68125 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035384 ID=TCONS_00035384|Name=TCONS_00035384|organism=Clytia hemisphaerica|type=transcript|length=981bp|location=Sequence derived from alignment at sc0001305:67145..68125 (Clytia hemisphaerica)
GTTTCGATGCCACAATGCTGAGTGTTTGGATCGTGCCAATGAACTTCTGA
AGCAATGCTGTAAGCAATTGGTGAGTTGTTGTCTAGGATTGGAACCATAA
ATGTTGTTGATGTGAGGTCTTTCATGGTGTCAGTGTAACGTCCAACGACA
GAAACTTGTGTTGTTGGCAAGATCCATACCGTTCATCAACTTTGAGTCTT
GGCTGACATCAGCAATGGTTGCACCACGTCTGGTTCCAAGATCTGCAATC
ATGTTGTTTCTGACCCACAACTTCAGTGGCTTTTCATCATTGGAGATCCA
ATGGAGAGCAATTTGTGAATCGGTGAATTTGAGTGAGGACTTGTGTAGTG
TTCCAAATGATCTACGAACTACTTCACCAGTGTGAGTGTTGATAAGTGCG
GCAAGTAGTTCAGCACGTGGCAATGAGAGTCCTTTTGGTACTGTACGTGT
TCTTGCAAACACAAGTTGGCAGGAGAATGAACCATTTTTCCGTTGGAATC
GTGCATAAATGCAGGTGCAGATTAATGATTTGCTTGAGTCGCCAAAGTCC
AATGTGTGTATGTCTGTGTTGAGAGCATCTTCTGGTACGATGGCTCGTTT
GAAACGTACTTCTCCGAGGTCTTTCATCATTTTGAAGTTGTCCAACCACG
TTTGACGGAGTTCATCAGGAATGATATCATTCCAGTCAAGTTGTCGTGCT
GTTAATTCGTGAAGATCGAGTTTCATTGAAGCAACGATTGGTGACATTTT
CCCTGTCAGATCGAAAATTTCTGCAACTTTGGATGCACAATCTCTACGTG
TTAGCTTGTCCGGGATGATGTTAGAtgcttttgaagatttctttccCCTC
CTCTTCTTGGAGAAATTGAAGTCCGAGATACTGAGTGTGAGTTCGTCGGT
TTCAGGGAACCATCTCATTCCTCCAACAGAGATGCTTGAACCATCTTCTG
ATAATTCTTCGGTTGGTTTCATTCCAGAGAA Coding sequence (CDS) from alignment at sc0001305:67145..68125 >TCONS_00035384 ID=TCONS_00035384|Name=TCONS_00035384|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0001305:67145..68125 (Clytia hemisphaerica)
TCAGTGTAACGTCCAACGACAGAAACTTGTGTTGTTGGCAAGATCCATAC
CGTTCATCAACTTTGAGTCTTGGCTGACATCAGCAATGGTTGCACCACGT
CTGGTTCCAAGATCTGCAATCATGTTGTTTCTGACCCACAACTTCAGTGG
CTTTTCATCATTGGAGATCCAATGGAGAGCAATTTGTGAATCGGTGAATT
TGAGTGAGGACTTGTGTAGTGTTCCAAATGATCTACGAACTACTTCACCA
GTGTGAGTGTTGATAAGTGCGGCAAGTAGTTCAGCACGTGGCAATGAGAG
TCCTTTTGGTACTGTACGTGTTCTTGCAAACACAAGTTGGCAGGAGAATG
AACCATTTTTCCGTTGGAATCGTGCATAAATGCAGGTGCAGATTAATGAT
TTGCTTGAGTCGCCAAAGTCCAATGTGTGTATGTCTGTGTTGAGAGCATC
TTCTGGTACGATGGCTCGTTTGAAACGTACTTCTCCGAGGTCTTTCATCA
TTTTGAAGTTGTCCAACCACGTTTGACGGAGTTCATCAGGAATGATATCA
TTCCAGTCAAGTTGTCGTGCTGTTAATTCGTGAAGATCGAGTTTCATTGA
AGCAACGATTGGTGACATTTTCCCTGTCAGATCGAAAATTTCTGCAACTT
TGGATGCACAATCTCTACGTGTTAGCTTGTCCGGGATGATGTTAGAtgct
tttgaagatttctttccCCTCCTCTTCTTGGAGAAATTGAAGTCCGAGAT
ACTGAGTGTGAGTTCGTCGGTTTCAGGGAACCATCTCATTCCTCCAACAG
AGATGCTTGAACCATCTTCTGATAATTCTTCGGTTGGTTTCATTCCAGAG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035384-exon-sc0001305-1491911889:67145..68125 | TCONS_00035384-exon-sc0001305-1491911889:67145..68125 | Clytia hemisphaerica | exon |
| TCONS_00035384-exon-sc0001305-1510915933:67145..68125 | TCONS_00035384-exon-sc0001305-1510915933:67145..68125 | Clytia hemisphaerica | exon |
| TCONS_00035384-exon-sc0001305-1575043694:67145..68125 | TCONS_00035384-exon-sc0001305-1575043694:67145..68125 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001305 | supercontig | sc0001305:67145..68125 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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