TCONS_00035376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035376
Unique NameTCONS_00035376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035376 ID=TCONS_00035376|Name=TCONS_00035376|organism=Clytia hemisphaerica|type=transcript|length=307bp
ATTTAATCTCCCCTGGATTAATGGGGAATGGGGTGAAGATCATGTAGACG
GATATAGACATTTTTTAGGAGACACAGTTAAAGCAAATTTGGGGGTGGAA
TGTCAGTATTCTACTTGTGAATATCTTTACAATGTGTATGGAAGTACAAT
TTAtttgattcaaattctatcaaagtCATTGCCTTGTTTGTTCATTTTAG
ATCATTTATGGATGAGAAGAAGTGTGCATTGATGAAATTTTACATACCAG
CATAGTCATTCATTTGAAAGTAGGTCATTGTCATGGCAACAATTTGTCCA
TTAAATT
Run BLAST on NCBI

transcript from alignment at sc0001305:30951..31257

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035376 ID=TCONS_00035376|Name=TCONS_00035376|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at sc0001305:30951..31257 (Clytia hemisphaerica)
AATTTAATGGACAAATTGTTGCCATGACAATGACCTACTTTCAAATGAAT
GACTATGCTGGTATGTAAAATTTCATCAATGCACACTTCTTCTCATCCAT
AAATGATCTAAAATGAACAAACAAGGCAATGactttgatagaatttgaat
caaaTAAATTGTACTTCCATACACATTGTAAAGATATTCACAAGTAGAAT
ACTGACATTCCACCCCCAAATTTGCTTTAACTGTGTCTCCTAAAAAATGT
CTATATCCGTCTACATGATCTTCACCCCATTCCCCATTAATCCAGGGGAG
ATTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020668XLOC_020668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035376-exon-sc0001305-1491911889:30951..31257TCONS_00035376-exon-sc0001305-1491911889:30951..31257Clytia hemisphaericaexon
TCONS_00035376-exon-sc0001305-1510915933:30951..31257TCONS_00035376-exon-sc0001305-1510915933:30951..31257Clytia hemisphaericaexon
TCONS_00035376-exon-sc0001305-1575043694:30951..31257TCONS_00035376-exon-sc0001305-1575043694:30951..31257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001305supercontigsc0001305:30951..31257 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.975796	0.771087	0.930284	4.3546	2.13413	1.51055	2.56581	0.963809	2.16555	0.249883	0.616314	1.9842	1.08639	0.835133	2.30756	2.01225	0.349802	2.55932	0	0.377136	0	0.693349	0	0	1.20469	1.63651
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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