TCONS_00035374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035374
Unique NameTCONS_00035374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035374 ID=TCONS_00035374|Name=TCONS_00035374|organism=Clytia hemisphaerica|type=transcript|length=459bp
TCCGAGGTGCTCTATCCAATCATCCCTGATCTGGGTCCGTAAGAAGCAAC
TTAAAATGACATTATCTGGTTTGTGGTTACTTGCATGTTTGCTGACCtcc
ttcaaaaaattgaaagatctCTCCTCATCTTCGGTGTTTGCTGAAACGTG
GTCGATGACCCGATATTGTAAAGGTGCCTGGTCGACGAGTGCGTAGAAGT
ACTGTCCAAACAACTTTCTTCTTGTGAGAGCCTTCGTTTTCTGGAACAGC
TCGGTCATCAAAACACCGTGCATAAAGGTGCCTTGGAATTTCCTTATACA
GGTTTGCAATATGACCCTTCAGCGTGTGCAATGGATCACATCCTAAAATT
TCGTAATCTTGAAGACCAACTTTCGTGAGATTTGTCTCAGCAGATTCGAA
AACCAAGGCTGGAAGGTGTTGGATGCCAGCCATTTCTTCTTCAAGTTGCG
GTAGAAGGA
Run BLAST on NCBI

transcript from alignment at sc0001305:13863..14563-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035374 ID=TCONS_00035374|Name=TCONS_00035374|organism=Clytia hemisphaerica|type=transcript|length=701bp|location=Sequence derived from alignment at sc0001305:13863..14563- (Clytia hemisphaerica)
TCCGAGGTGCTCTATCCAATCATCCCTGATCTGGGTCCGTAAGAAGCAAC
TTAAAATGACATTATCTGGTTTGTGGTTACTTGCATGTTTGCTGACCTCC
TTCAAAAAATTGAAAGATCTCTCCTCATCTTCGGTGTTTGCTGAAACGTG
GTCGATGACCCGATATTGTAAAGGTGCCTGGTCGACGAGTGCGTAGAAGT
ACTGTCCAAACAACTTTCTTCTTGTGAGAGCCTTCGTTTTCTGGAACAGC
TCGGTCATCAAAACACCGTGCATAAAGGTAAGGTTATGAAAACGAAGCAC
TGATTTTCCTGTTCTCTTATCCTCCCCAGCGTACATAATTTCCTGTATCT
CACTAAGCTGCCGTAGCAATTTGACATACCCGTCATCGATTTCCCCATCC
AAGAATATTGTCAATTCAATGAGGCTTTTTCTATGGTCTGCTCCATTCTT
GGATTCTTTGCCACGGAAGGAGGCAACAACAGAATCTTTAAACATTTTCT
TTTCCTTTTTTGTTTCCAGGTGCCTTGGAATTTCCTTATACAGGTTTGCA
ATATGACCCTTCAGCGTGTGCAATGGATCACATCCTAAAATTTCGTAATC
TTGAAGACCAACTTTCGTGAGATTTGTCTCAGCAGATTCGAAAACCAAGG
CTGGAAGGTGTTGGATGCCAGCCATTTCTTCTTCAAGTTGCGGTAGAAGG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020666XLOC_020666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035374-exon-sc0001305-1575043694:14287..14563TCONS_00035374-exon-sc0001305-1575043694:14287..14563Clytia hemisphaericaexon
TCONS_00035374-exon-sc0001305-1575043694:13863..14044TCONS_00035374-exon-sc0001305-1575043694:13863..14044Clytia hemisphaericaexon
TCONS_00035374-exon-sc0001305-1510915933:14287..14563TCONS_00035374-exon-sc0001305-1510915933:14287..14563Clytia hemisphaericaexon
TCONS_00035374-exon-sc0001305-1510915933:13863..14044TCONS_00035374-exon-sc0001305-1510915933:13863..14044Clytia hemisphaericaexon
TCONS_00035374-exon-sc0001305-1491911889:14287..14563TCONS_00035374-exon-sc0001305-1491911889:14287..14563Clytia hemisphaericaexon
TCONS_00035374-exon-sc0001305-1491911889:13863..14044TCONS_00035374-exon-sc0001305-1491911889:13863..14044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001305supercontigsc0001305:13863..14563 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283822	0.276771	0	0	0.191375	0	0.547347	0.170806	0.358757	0.444378	1.58152	0.756095	1.22695	1.37221	0.161163	0.172953	0	0	0	0	0	0	0.162712	0	0.609454	0.679904	0	0	0.15751	0.481434
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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