TCONS_00035373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035373
Unique NameTCONS_00035373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035373 ID=TCONS_00035373|Name=TCONS_00035373|organism=Clytia hemisphaerica|type=transcript|length=429bp
CTCTATGCCAAATTCATGAAATATATTCGCAAGGCTGCCAGCGGACGACG
CGAGCCTGTGTCATTGGGGCATATTTTGAAATTCGTTACTGGATCTGACC
TAGAACCACTCCTTGGCTTCAGTATCAACCCTTCTATAAGATTCGTGGAG
ACACTTAAGAAGGGTCAATTTACCCCAACCTGCAGTACGTGCATAAACGA
ATTGATTTTGCCTCGGGCGACACCTTTAATCCCGATGCCAAATGACGAGA
CAATTTTCAAACTATATGATTATGCTTTTTGCAATGAATACTTTGGCCGA
AAATAATACActcattttttgtaagcatacGGGAATATCGTACTGAAGCT
CATTACTGTATGCTTAGCAAAATTTCGTTTTCAGCCAAATTATGTTTAAC
CGTGTTATGCTTAAGACTTAGCAATTCAG
Run BLAST on NCBI

protein sequence of TCONS_00035373-protein

>TCONS_00035373-protein ID=TCONS_00035373-protein|Name=TCONS_00035373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
LYAKFMKYIRKAASGRREPVSLGHILKFVTGSDLEPLLGFSINPSIRFVE
TLKKGQFTPTCSTCINELILPRATPLIPMPNDETIFKLYDYAFCNEYFGR
K
Run BLAST on NCBI

transcript from alignment at sc0001305:46137..46834+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035373 ID=TCONS_00035373|Name=TCONS_00035373|organism=Clytia hemisphaerica|type=transcript|length=698bp|location=Sequence derived from alignment at sc0001305:46137..46834+ (Clytia hemisphaerica)
CTCTATGCCAAATTCATGAAATATATTCGCAAGGCTGCCAGCAGTGAGTG
ACATATTTAGTTTTCTTTACAAATAATAGGGCTCTTGCAGCTGAGCAAAG
AAATGTAGTAAATCAAACTTAAATCAACTCAATTTCGTAGATCAAAACGT
TTTTATAAACAATAAAGTGTCTAATTTTGCATGAATTACGCAGGTTGTGA
GGgaaatttctaatattttttttatgactcaaaaatcttttttgatttta
ctgtaATTCATACCAGGATGTACTTTTCAAACTTACGAAATATTGTTTGC
TTGTTATAGGCGGACGACGCGAGCCTGTGTCATTGGGGCATATTTTGAAA
TTCGTTACTGGATCTGACCTAGAACCACTCCTTGGCTTCAGTATCAACCC
TTCTATAAGATTCGTGGAGACACTTAAGAAGGGTCAATTTACCCCAACCT
GCAGTACGTGCATAAACGAATTGATTTTGCCTCGGGCGACACCTTTAATC
CCGATGCCAAATGACGAGACAATTTTCAAACTATATGATTATGCTTTTTG
CAATGAATACTTTGGCCGAAAATAATACActcattttttgtaagcatacG
GGAATATCGTACTGAAGCTCATTACTGTATGCTTAGCAAAATTTCGTTTT
CAGCCAAATTATGTTTAACCGTGTTATGCTTAAGACTTAGCAATTCAG

Coding sequence (CDS) from alignment at sc0001305:46137..46834+

>TCONS_00035373 ID=TCONS_00035373|Name=TCONS_00035373|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0001305:46137..46834+ (Clytia hemisphaerica)
CTCTATGCCAAATTCATGAAATATATTCGCAAGGCTGCCAGCGGACGACG
CGAGCCTGTGTCATTGGGGCATATTTTGAAATTCGTTACTGGATCTGACC
TAGAACCACTCCTTGGCTTCAGTATCAACCCTTCTATAAGATTCGTGGAG
ACACTTAAGAAGGGTCAATTTACCCCAACCTGCAGTACGTGCATAAACGA
ATTGATTTTGCCTCGGGCGACACCTTTAATCCCGATGCCAAATGACGAGA
CAATTTTCAAACTATATGATTATGCTTTTTGCAATGAATACTTTGGCCGA
AAATAACTCTATGCCAAATTCATGAAATATATTCGCAAGGCTGCCAGCGG
ACGACGCGAGCCTGTGTCATTGGGGCATATTTTGAAATTCGTTACTGGAT
CTGACCTAGAACCACTCCTTGGCTTCAGTATCAACCCTTCTATAAGATTC
GTGGAGACACTTAAGAAGGGTCAATTTACCCCAACCTGCAGTACGTGCAT
AAACGAATTGATTTTGCCTCGGGCGACACCTTTAATCCCGATGCCAAATG
ACGAGACAATTTTCAAACTATATGATTATGCTTTTTGCAATGAATACTTT
GGCCGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020665XLOC_020665Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035373-proteinTCONS_00035373-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035373-exon-sc0001305-1491911889:46137..46176TCONS_00035373-exon-sc0001305-1491911889:46137..46176Clytia hemisphaericaexon
TCONS_00035373-exon-sc0001305-1510915933:46137..46176TCONS_00035373-exon-sc0001305-1510915933:46137..46176Clytia hemisphaericaexon
TCONS_00035373-exon-sc0001305-1575043694:46137..46176TCONS_00035373-exon-sc0001305-1575043694:46137..46176Clytia hemisphaericaexon
TCONS_00035373-exon-sc0001305-1491911889:46446..46834TCONS_00035373-exon-sc0001305-1491911889:46446..46834Clytia hemisphaericaexon
TCONS_00035373-exon-sc0001305-1510915933:46446..46834TCONS_00035373-exon-sc0001305-1510915933:46446..46834Clytia hemisphaericaexon
TCONS_00035373-exon-sc0001305-1575043694:46446..46834TCONS_00035373-exon-sc0001305-1575043694:46446..46834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001305supercontigsc0001305:46137..46834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.171849	0	0	0	0	0	0.1074	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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