TCONS_00035367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035367
Unique NameTCONS_00035367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035367 ID=TCONS_00035367|Name=TCONS_00035367|organism=Clytia hemisphaerica|type=transcript|length=813bp
taaagcaaataaaatctcTCTCAACACTAGTAAAACTGAGCTTTTGTTGT
TTCGTCCTGTCCGAAAGAAGATCGATTATgacttgaaaatcaaaatgaac
gGACATCGGCTTAGACCCAGCAAGGTTGTAAAGTATCTTTGTGTATACAT
CGATGAACATCTGAACTGGAAACACCACATTGATTTTGTCTGCAATAAAT
TGAAGCGAGCTAATGGAGCTCTAAGTAAACTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGCCAAACAATCCACGCCCGTCGAGTTcttattcttcaaaaacaag
CTCTCAGAATCATGTCTTTCTCTGACTTTCGTGCACATACTTTTCCactg
tttttagaatttaaacttcttcaattttttgactttgtaaAATACCTTAA
TATCCtcgatttcttttcaaatttttgaatcgaaaattacctcttcctct
tttacaaactcttgAATACAAACGTCTTAATGATACTGACCGTCATGAAG
TAATTCGTTGTAAGTCTGGACTNNTGACTTATGGTAACTATTCAATTTTA
TACCAATCCATCTTGGTTTGGAATGAACTTCAAAATTTCGTTTCTCTCGA
TGATTTGTCTACACTAGCATTGGATCGTCttaaaaatttgagcaaattat
ATTTCCTCTCGTCGTACACttgatttgtgtttttttttctttttcgagtt
tgattttaaattttaacattttcctttcttttcttttctttttctttttc
tttttattctttt
Run BLAST on NCBI

protein sequence of TCONS_00035367-protein

>TCONS_00035367-protein ID=TCONS_00035367-protein|Name=TCONS_00035367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
KANKISLNTSKTELLLFRPVRKKIDYDLKIKMNGHRLRPSKVVKYLCVYI
DEHLNWKHHIDFVCNKLKRANGALSKXXXXXXXXXXXXXXXXXXXXXXXX
XXQTIHARRVLILQKQALRIMSFSDFRAHTFPLFLEFKLLQFFDFVKYLN
ILDFFSNF
Run BLAST on NCBI

transcript from alignment at sc0001303:935..1747

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035367 ID=TCONS_00035367|Name=TCONS_00035367|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at sc0001303:935..1747 (Clytia hemisphaerica)
aaaagaataaaaagaaaaagaaaaagaaaagaaaagaaaggaaaatgtta
aaatttaaaatcaaactcgaaaaagaaaaaaaaacacaaatcaaGTGTAC
GACGAGAGGAAATataatttgctcaaatttttaaGACGATCCAATGCTAG
TGTAGACAAATCATCGAGAGAAACGAAATTTTGAAGTTCATTCCAAACCA
AGATGGATTGGTATAAAATTGAATAGTTACCATAAGTCANNAGTCCAGAC
TTACAACGAATTACTTCATGACGGTCAGTATCATTAAGACGTTTGTATTc
aagagtttgtaaaagaggaagaggtaattttcgattcaaaaatttgaaaa
gaaatcgaGGATATTAAGGTATTttacaaagtcaaaaaattgaagaagtt
taaattctaaaaacagtGGAAAAGTATGTGCACGAAAGTCAGAGAAAGAC
ATGATTCTGAGAGcttgtttttgaagaataagAACTCGACGGGCGTGGAT
TGTTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTACTTAGAGCTCCA
TTAGCTCGCTTCAATTTATTGCAGACAAAATCAATGTGGTGTTTCCAGTT
CAGATGTTCATCGATGTATACACAAAGATACTTTACAACCTTGCTGGGTC
TAAGCCGATGTCcgttcattttgattttcaagtcATAATCGATCTTCTTT
CGGACAGGACGAAACAACAAAAGCTCAGTTTTACTAGTGTTGAGAgagat
tttatttgcttta

Coding sequence (CDS) from alignment at sc0001303:935..1747

>TCONS_00035367 ID=TCONS_00035367|Name=TCONS_00035367|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0001303:935..1747 (Clytia hemisphaerica)
tcaaaaatttgaaaagaaatcgaGGATATTAAGGTATTttacaaagtcaa
aaaattgaagaagtttaaattctaaaaacagtGGAAAAGTATGTGCACGA
AAGTCAGAGAAAGACATGATTCTGAGAGcttgtttttgaagaataagAAC
TCGACGGGCGTGGATTGTTTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGT
TTACTTAGAGCTCCATTAGCTCGCTTCAATTTATTGCAGACAAAATCAAT
GTGGTGTTTCCAGTTCAGATGTTCATCGATGTATACACAAAGATACTTTA
CAACCTTGCTGGGTCTAAGCCGATGTCcgttcattttgattttcaagtcA
TAATCGATCTTCTTTCGGACAGGACGAAACAACAAAAGCTCAGTTTTACT
AGTGTTGAGAgagattttatttgcttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020659XLOC_020659Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035367-proteinTCONS_00035367-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035367-exon-sc0001303-1491911889:935..1747TCONS_00035367-exon-sc0001303-1491911889:935..1747Clytia hemisphaericaexon
TCONS_00035367-exon-sc0001303-1510915933:935..1747TCONS_00035367-exon-sc0001303-1510915933:935..1747Clytia hemisphaericaexon
TCONS_00035367-exon-sc0001303-1575043694:935..1747TCONS_00035367-exon-sc0001303-1575043694:935..1747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001303supercontigsc0001303:935..1747 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.725033	0.67142	0.99491	1.34968	0.895091	0.062594	0.679653	0.989773	0.356888	0.415824	1.01166	0.383338	0.807607	1.04002	0.876159	0.890581	0.799422	0.732491	0.749277	0.86666	2.57513	2.23762	0.975386	2.02513	1.89623	1.96992	1.48825	1.71912	1.87254	1.86166
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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