TCONS_00035366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035366
Unique NameTCONS_00035366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035366 ID=TCONS_00035366|Name=TCONS_00035366|organism=Clytia hemisphaerica|type=transcript|length=1073bp
gGCACATATTCGAAAGGCCTATGAGATGGATTTGAATAAGAACAGCCTTT
CACCTGGTTTACGGAAACTTTACAGGATTACTTTTGATCACATTCATCTC
ACTCCAAGACTACGCATGCGAGTCAACTTGGCTGCTCAGGTTTTGAGCAA
AACCATGGCTGATTATTTACAACTTCAAGGTCATGAATATACCAAAGCAA
CTGAAGAATTTATTCGAAAAGTTGACAAGTTTTTTGATTGCTTAAATGGT
GGCCATGTTTGGAAAGCACAAAcaaagttaaagaaaaatttgaagccTTA
TTACAAAGCTGAGATTGAAAAGACAGACCCCGAAGAAAATCGGCTCAAGT
GGCTTAAAGATGTATTACTCAAGTATTTCAATGACTGGAAGTCAGAAACA
CAAACTTTGAACATGGAAAAGGAGGACCAGGCAAAATGCTGCATAAGTCA
TCAGACTTTAGACGGACTCAGAATAACTGtCAATTCGATTGTCAACATTA
TACCAGAGATATTATCAATCCAAGGAATCCAATACGTTCTATCAGATAAA
TTCAACCAGGATCCCATTGAGGAGCACTTCGGAAAACAAAGATCGAAAGG
AGGTGTTGACAACCCTTCTTTGGAACAGTATATGTACACTGAAAGAAaga
taattgtttcaaaatCGGACATGATAATAAAAGGAAGCAATACAAGAGGT
AGGAGAGACAAAAAGANCGGACATGATAATAAAAGGAAGCAATACAAGAG
GTAGGAGAGACAAAAAGATCGTCATTGATGTGAAAGATACCCGTGAATTG
CCAAAAAGAGCGAAGAAATCCAAAGTCGTAAAGAAATCCAAAGTCGTAAA
GAAATCTAAAGTTGTAAAgccgaaaaagaaaaagactgatgtttaaaatc
ttcactatatttctatttttttcataacattaTAATTTATTTTATCCATC
GACAACTTACATTTTACTTTCCTTTAGTTTGCTTCTGTCAACAACTGTCT
TTTCCTTTACTCTTTTGCTCCTAAAGGGATTCTAATTAAGGGTGAAGGCT
CAtggaaaaatctacaaaaaaac
Run BLAST on NCBI

protein sequence of TCONS_00035366-protein

>TCONS_00035366-protein ID=TCONS_00035366-protein|Name=TCONS_00035366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
AHIRKAYEMDLNKNSLSPGLRKLYRITFDHIHLTPRLRMRVNLAAQVLSK
TMADYLQLQGHEYTKATEEFIRKVDKFFDCLNGGHVWKAQTKLKKNLKPY
YKAEIEKTDPEENRLKWLKDVLLKYFNDWKSETQTLNMEKEDQAKCCISH
QTLDGLRITVNSIVNIIPEILSIQGIQYVLSDKFNQDPIEEHFGKQRSKG
GVDNPSLEQYMYTERKIIVSKSDMIIKGSNTRGRRDKKXGHDNKRKQYKR
Run BLAST on NCBI

transcript from alignment at sc0001303:71280..73447+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035366 ID=TCONS_00035366|Name=TCONS_00035366|organism=Clytia hemisphaerica|type=transcript|length=2168bp|location=Sequence derived from alignment at sc0001303:71280..73447+ (Clytia hemisphaerica)
gGCACATATTCGAAAGGCCTATGAGATGGATTTGAATAAGAACAGCCTTT
CACCTGGTTTACGGAAACTTTACAGGATTACTTTTGATCACATTCATCTC
ACTCCAAGACTACGCATGCGAGTCAACTTGGCTGCTCAGGTCAGTATTAC
GTGCATTACTTCAGTATGCATTACGTGCATTACTTTAATTCTTAGTTTTC
TGAGAGAAAGGCTTAGAGGTTAATAATACATTTAGTCATGCATAACTGCA
TTGTGGTGAACTTTAAGCGAAAATTTAGTTCGCACGAAttctgcaaactt
tttgatgttATGAACTATTGAATGAACTGggtttttttcttactttttgg
aatcaattgtttttatttgtatACTAATTGATTTGACTATTATTTTACAC
CTCGTAGGAATTTCACACCATTTGTTGTCATTTAATCACTAACtactttg
tttataatttttactACCAGTCGGAAATCTAACACCAGCTAAATAACTAA
ATAAATTTTCCTacagtttttttgaaatgaaCTTTTCCCTACTCTAAAAT
TATGACATTATGACAGTATTAATCAAAAGTTGAAGGAACTTTTATAACTT
AATTACATTTTTTGTAGGTTTTGAGCAAAACCATGGCTGATTATTTACAA
CTTCAAGGTCATGAATATACCAAAGCAACTGAAGAATTTATTCGAAAAGT
TGACAAGTTTTTTGATTGCTTAAATGGTGGCCATGTTTGGAAAGCACAAA
caaagttaaagaaaaatttgaagccTTATTACAAAGCTGAGATTGAAAAG
ACAGACCCCGAAGAAAATCGGCTCAAGGTACTTATAGAAATATTGTATTT
ACGTGATACTCTCAATCTGACTTAGCCtcttatgctaaatttaagagctt
ttttattagaattttatagtataaatgatttttgaatagatatcatttat
atttttttgttaaatgctTCAGAGGAATTGTTTTGTGTCTATTTCAGTGG
CTTAAAGATGTATTACTCAAGTATTTCAATGACTGGAAGTCAGAAACACA
AACTTTGAACATGGAAAAGGAGGACCAGGCAAAATGCTGCATAAGTCATC
AGACTTTAGACGGACTCAGAATAACTGGTACGTATAATTTAtaataaaag
caaaatttttgccGATGTGGTTCACATCAACAATTCTAGAAAAACATgat
ctttttagaattttcttgACCAAGATTTCAGTATGCTCATGaattattct
attttattttagtCAATTCGATTGTCAACATTATACCAGAGATATTATCA
ATCCAAGGAATCCAATACGTTCTATCAGATAAATTCAACCAGGATCCCAT
TGAGGAGCACTTCGGAAAACAAAGGttagaatattttaattttttgagag
agaATCAATTATCCTCGTTAGTAACCCATAGTTACAAATAAAGAAACCCT
TTAGGAGTACATGGAATTTTGATTTGTTGTCATGGtaacgagaaatattt
ttccattttgaattttcgaaatatttcgAATGGTTGGTTCGTTATTGACG
GAACTACTTAAACCCAAAAGTATGTGAGTGGCCATTACTTATTTTGGAGT
AGAAAAATTTGACCATTAGTATTTTTTGTATTGGTGCTTGGATATTGCAT
AAGTTTTAACCTGTAGTTATTCTAATATCATTATAGATCGAAAGGAGGTG
TTGACAACCCTTCTTTGGAACAGTATATGTACACTGAAAGAAagataatt
gtttcaaaatCGGACATGATAATAAAAGGAAGCAATACAAGAGGTAGGAG
AGACAAAAAGANCGGACATGATAATAAAAGGAAGCAATACAAGAGGTAGG
AGAGACAAAAAGATCGTCATTGATGTGAAAGATACCCGTGAATTGCCAAA
AAGAGCGAAGAAATCCAAAGTCGTAAAGAAATCCAAAGTCGTAAAGAAAT
CTAAAGTTGTAAAgccgaaaaagaaaaagactgatgtttaaaatcttcac
tatatttctatttttttcataacattaTAATTTATTTTATCCATCGACAA
CTTACATTTTACTTTCCTTTAGTTTGCTTCTGTCAACAACTGTCTTTTCC
TTTACTCTTTTGCTCCTAAAGGGATTCTAATTAAGGGTGAAGGCTCAtgg
aaaaatctacaaaaaaac

Coding sequence (CDS) from alignment at sc0001303:71280..73447+

>TCONS_00035366 ID=TCONS_00035366|Name=TCONS_00035366|organism=Clytia hemisphaerica|type=CDS|length=3765bp|location=Sequence derived from alignment at sc0001303:71280..73447+ (Clytia hemisphaerica)
GCACATATTCGAAAGGCCTATGAGATGGATTTGAATAAGAACAGCCTTTC
ACCTGGTTTACGGAAACTTTACAGGATTACTTTTGATCACATTCATCTCA
CTCCAAGACTACGCATGCGAGTCAACTTGGCTGCTCAGGTTTTGAGCAAA
ACCATGGCTGATTATTTACAACTTCAAGGTCATGAATATACCAAAGCAAC
TGAAGAATTTATTCGAAAAGTTGACAAGTTTTTTGATTGCTTAAATGGTG
GCCATGTTTGGAAAGCACAAAcaaagttaaagaaaaatttgaagccTTAT
TACAAAGCTGAGATTGAAAAGACAGACCCCGAAGAAAATCGGCTCAAGTG
GCTTAAAGATGTATTACTCAAGTATTTCAATGACTGGAAGTCAGAAACAC
AAACTTTGAACATGGAAAAGGAGGACCAGGCAAAATGCTGCATAAGTCAT
CAGACTTTAGACGGACTCAGAATAACTGtCAATTCGATTGTCAACATTAT
ACCAGAGATATTATCAATCCAAGGAATCCAATACGTTCTATCAGATAAAT
TCAACCAGGATCCCATTGAGGAGCACTTCGGAAAACAAAGATCGAAAGGA
GGTGTTGACAACCCTTCTTTGGAACAGTATATGTACACTGAAAGAAagat
aattgtttcaaaatCGGACATGATAATAAAAGGAAGCAATACAAGAGGTA
GGAGAGACAAAAAGANCGGACATGATAATAAAAGGAAGCAATACAAGAGG
TAGGCACATATTCGAAAGGCCTATGAGATGGATTTGAATAAGAACAGCCT
TTCACCTGGTTTACGGAAACTTTACAGGATTACTTTTGATCACATTCATC
TCACTCCAAGACTACGCATGCGAGTCAACTTGGCTGCTCAGGTTTTGAGC
AAAACCATGGCTGATTATTTACAACTTCAAGGTCATGAATATACCAAAGC
AACTGAAGAATTTATTCGAAAAGTTGACAAGTTTTTTGATTGCTTAAATG
GTGGCCATGTTTGGAAAGCACAAAcaaagttaaagaaaaatttgaagccT
TATTACAAAGCTGAGATTGAAAAGACAGACCCCGAAGAAAATCGGCTCAA
GTGGCTTAAAGATGTATTACTCAAGTATTTCAATGACTGGAAGTCAGAAA
CACAAACTTTGAACATGGAAAAGGAGGACCAGGCAAAATGCTGCATAAGT
CATCAGACTTTAGACGGACTCAGAATAACTGtCAATTCGATTGTCAACAT
TATACCAGAGATATTATCAATCCAAGGAATCCAATACGTTCTATCAGATA
AATTCAACCAGGATCCCATTGAGGAGCACTTCGGAAAACAAAGATCGAAA
GGAGGTGTTGACAACCCTTCTTTGGAACAGTATATGTACACTGAAAGAAa
gataattgtttcaaaatCGGACATGATAATAAAAGGAAGCAATACAAGAG
GTAGGAGAGACAAAAAGANCGGACATGATAATAAAAGGAAGCAATACAAG
AGGTAGGCACATATTCGAAAGGCCTATGAGATGGATTTGAATAAGAACAG
CCTTTCACCTGGTTTACGGAAACTTTACAGGATTACTTTTGATCACATTC
ATCTCACTCCAAGACTACGCATGCGAGTCAACTTGGCTGCTCAGGTTTTG
AGCAAAACCATGGCTGATTATTTACAACTTCAAGGTCATGAATATACCAA
AGCAACTGAAGAATTTATTCGAAAAGTTGACAAGTTTTTTGATTGCTTAA
ATGGTGGCCATGTTTGGAAAGCACAAAcaaagttaaagaaaaatttgaag
ccTTATTACAAAGCTGAGATTGAAAAGACAGACCCCGAAGAAAATCGGCT
CAAGTGGCTTAAAGATGTATTACTCAAGTATTTCAATGACTGGAAGTCAG
AAACACAAACTTTGAACATGGAAAAGGAGGACCAGGCAAAATGCTGCATA
AGTCATCAGACTTTAGACGGACTCAGAATAACTGtCAATTCGATTGTCAA
CATTATACCAGAGATATTATCAATCCAAGGAATCCAATACGTTCTATCAG
ATAAATTCAACCAGGATCCCATTGAGGAGCACTTCGGAAAACAAAGATCG
AAAGGAGGTGTTGACAACCCTTCTTTGGAACAGTATATGTACACTGAAAG
AAagataattgtttcaaaatCGGACATGATAATAAAAGGAAGCAATACAA
GAGGTAGGAGAGACAAAAAGANCGGACATGATAATAAAAGGAAGCAATAC
AAGAGGTAGGCACATATTCGAAAGGCCTATGAGATGGATTTGAATAAGAA
CAGCCTTTCACCTGGTTTACGGAAACTTTACAGGATTACTTTTGATCACA
TTCATCTCACTCCAAGACTACGCATGCGAGTCAACTTGGCTGCTCAGGTT
TTGAGCAAAACCATGGCTGATTATTTACAACTTCAAGGTCATGAATATAC
CAAAGCAACTGAAGAATTTATTCGAAAAGTTGACAAGTTTTTTGATTGCT
TAAATGGTGGCCATGTTTGGAAAGCACAAAcaaagttaaagaaaaatttg
aagccTTATTACAAAGCTGAGATTGAAAAGACAGACCCCGAAGAAAATCG
GCTCAAGTGGCTTAAAGATGTATTACTCAAGTATTTCAATGACTGGAAGT
CAGAAACACAAACTTTGAACATGGAAAAGGAGGACCAGGCAAAATGCTGC
ATAAGTCATCAGACTTTAGACGGACTCAGAATAACTGtCAATTCGATTGT
CAACATTATACCAGAGATATTATCAATCCAAGGAATCCAATACGTTCTAT
CAGATAAATTCAACCAGGATCCCATTGAGGAGCACTTCGGAAAACAAAGA
TCGAAAGGAGGTGTTGACAACCCTTCTTTGGAACAGTATATGTACACTGA
AAGAAagataattgtttcaaaatCGGACATGATAATAAAAGGAAGCAATA
CAAGAGGTAGGAGAGACAAAAAGANCGGACATGATAATAAAAGGAAGCAA
TACAAGAGGTAGGCACATATTCGAAAGGCCTATGAGATGGATTTGAATAA
GAACAGCCTTTCACCTGGTTTACGGAAACTTTACAGGATTACTTTTGATC
ACATTCATCTCACTCCAAGACTACGCATGCGAGTCAACTTGGCTGCTCAG
GTTTTGAGCAAAACCATGGCTGATTATTTACAACTTCAAGGTCATGAATA
TACCAAAGCAACTGAAGAATTTATTCGAAAAGTTGACAAGTTTTTTGATT
GCTTAAATGGTGGCCATGTTTGGAAAGCACAAAcaaagttaaagaaaaat
ttgaagccTTATTACAAAGCTGAGATTGAAAAGACAGACCCCGAAGAAAA
TCGGCTCAAGTGGCTTAAAGATGTATTACTCAAGTATTTCAATGACTGGA
AGTCAGAAACACAAACTTTGAACATGGAAAAGGAGGACCAGGCAAAATGC
TGCATAAGTCATCAGACTTTAGACGGACTCAGAATAACTGtCAATTCGAT
TGTCAACATTATACCAGAGATATTATCAATCCAAGGAATCCAATACGTTC
TATCAGATAAATTCAACCAGGATCCCATTGAGGAGCACTTCGGAAAACAA
AGATCGAAAGGAGGTGTTGACAACCCTTCTTTGGAACAGTATATGTACAC
TGAAAGAAagataattgtttcaaaatCGGACATGATAATAAAAGGAAGCA
ATACAAGAGGTAGGAGAGACAAAAAGANCGGACATGATAATAAAAGGAAG
CAATACAAGAGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020658XLOC_020658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035366-exon-sc0001303-1491911889:71280..71418TCONS_00035366-exon-sc0001303-1491911889:71280..71418Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1510915933:71280..71418TCONS_00035366-exon-sc0001303-1510915933:71280..71418Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1575043694:71280..71418TCONS_00035366-exon-sc0001303-1575043694:71280..71418Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1491911889:71897..72106TCONS_00035366-exon-sc0001303-1491911889:71897..72106Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1510915933:71897..72106TCONS_00035366-exon-sc0001303-1510915933:71897..72106Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1575043694:71897..72106TCONS_00035366-exon-sc0001303-1575043694:71897..72106Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1491911889:72277..72406TCONS_00035366-exon-sc0001303-1491911889:72277..72406Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1510915933:72277..72406TCONS_00035366-exon-sc0001303-1510915933:72277..72406Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1575043694:72277..72406TCONS_00035366-exon-sc0001303-1575043694:72277..72406Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1491911889:72542..72653TCONS_00035366-exon-sc0001303-1491911889:72542..72653Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1510915933:72542..72653TCONS_00035366-exon-sc0001303-1510915933:72542..72653Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1575043694:72542..72653TCONS_00035366-exon-sc0001303-1575043694:72542..72653Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1491911889:72966..73447TCONS_00035366-exon-sc0001303-1491911889:72966..73447Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1510915933:72966..73447TCONS_00035366-exon-sc0001303-1510915933:72966..73447Clytia hemisphaericaexon
TCONS_00035366-exon-sc0001303-1575043694:72966..73447TCONS_00035366-exon-sc0001303-1575043694:72966..73447Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035366-proteinTCONS_00035366-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001303supercontigsc0001303:71280..73447 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.948445	2.00137	1.00376	0.538975	7.72858	6.0768	4.03557	4.7515	4.81562	5.15486	5.29076	3.85399	2.05373	1.84233	5.30492	6.5496	8.73038	12.3304	4.3715	3.83336	10.2845	11.16	4.90402	7.23876	0.964634	0.944234	6.09538	4.60969	1.60467	1.32718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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