TCONS_00035363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035363
Unique NameTCONS_00035363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035363 ID=TCONS_00035363|Name=TCONS_00035363|organism=Clytia hemisphaerica|type=transcript|length=845bp
ATCATTGGCGTACTCGACCGCTTTGATGTCTTTGATGCTTGGTTACTTCT
TCTCTACTAAATTGATCAAGTTTTTCGGAGGTCCTTGGAACGTCTTCATT
ATTGGGTTTATCGCTTACACCATCAGATATATGGTCTATGGGTTCATGGG
AAACCCATGGTTAGTGTTAACAGTGCAGCCTCTACACCTCTTAAACAGGG
CTGTCTTAAATGCGGCAGCTGTCACTTACATCAAAAGTATCACAGATCCC
GACATCTTAACATCCATTTACGCCATTATGGATTCTATCCAGACAGGAAT
TGGTTGGATTATAGGGAACTCTTTCGGTGGCTATGTTTACCATTTATACG
GTGGCCGAATATTGTATATATCCGTAGCGTGTATTGATCTTTTATGGGCG
TTTTTTATATTCATTTTCTCACGATCGAGGTTTGCGAAAATGTCACCTTC
GTTCTATGTTCAAGAACGGCCGGTTGAAACGGAGAAAAAGAGAACGCCCT
CTTGTTGAGACTTGATGATGGATTACAGGATAAAGGAGTTTAATATTTTA
CCTGAGACTTATAACTGTCATTTGCCGTTTTAGTAATCACTAAGAAAAAC
ATGTGCACAATAGAGTCAGGGTGTTAGAGTGGTTTACGAAAAAtatagtg
gcggtagagtttggagcAAACACTGTTAACACCTCCGCCACTACTTACTG
CGTTAAACTCCCTTTTCACAAATTTCTCCCGCCTCCTAAATTaatccctt
ttttagtgatagCATTGTCTAcagtttttcttcaatatataTTGAATTTT
GctcatttagatttttttttaaataaaagcaaGCATTTCTAAGCA
Run BLAST on NCBI

protein sequence of TCONS_00035363-protein

>TCONS_00035363-protein ID=TCONS_00035363-protein|Name=TCONS_00035363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
SLAYSTALMSLMLGYFFSTKLIKFFGGPWNVFIIGFIAYTIRYMVYGFMG
NPWLVLTVQPLHLLNRAVLNAAAVTYIKSITDPDILTSIYAIMDSIQTGI
GWIIGNSFGGYVYHLYGGRILYISVACIDLLWAFFIFIFSRSRFAKMSPS
FYVQERPVETEKKRTPSC
Run BLAST on NCBI

transcript from alignment at sc0001302:44817..45661

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035363 ID=TCONS_00035363|Name=TCONS_00035363|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at sc0001302:44817..45661 (Clytia hemisphaerica)
TGCTTAGAAATGCttgcttttatttaaaaaaaaatctaaatgagCAAAAT
TCAAtatatattgaagaaaaactgTAGACAATGctatcactaaaaaaggg
attAATTTAGGAGGCGGGAGAAATTTGTGAAAAGGGAGTTTAACGCAGTA
AGTAGTGGCGGAGGTGTTAACAGTGTTTgctccaaactctaccgccacta
taTTTTTCGTAAACCACTCTAACACCCTGACTCTATTGTGCACATGTTTT
TCTTAGTGATTACTAAAACGGCAAATGACAGTTATAAGTCTCAGGTAAAA
TATTAAACTCCTTTATCCTGTAATCCATCATCAAGTCTCAACAAGAGGGC
GTTCTCTTTTTCTCCGTTTCAACCGGCCGTTCTTGAACATAGAACGAAGG
TGACATTTTCGCAAACCTCGATCGTGAGAAAATGAATATAAAAAACGCCC
ATAAAAGATCAATACACGCTACGGATATATACAATATTCGGCCACCGTAT
AAATGGTAAACATAGCCACCGAAAGAGTTCCCTATAATCCAACCAATTCC
TGTCTGGATAGAATCCATAATGGCGTAAATGGATGTTAAGATGTCGGGAT
CTGTGATACTTTTGATGTAAGTGACAGCTGCCGCATTTAAGACAGCCCTG
TTTAAGAGGTGTAGAGGCTGCACTGTTAACACTAACCATGGGTTTCCCAT
GAACCCATAGACCATATATCTGATGGTGTAAGCGATAAACCCAATAATGA
AGACGTTCCAAGGACCTCCGAAAAACTTGATCAATTTAGTAGAGAAGAAG
TAACCAAGCATCAAAGACATCAAAGCGGTCGAGTACGCCAATGAT

Coding sequence (CDS) from alignment at sc0001302:44817..45661

>TCONS_00035363 ID=TCONS_00035363|Name=TCONS_00035363|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0001302:44817..45661 (Clytia hemisphaerica)
TCAACAAGAGGGCGTTCTCTTTTTCTCCGTTTCAACCGGCCGTTCTTGAA
CATAGAACGAAGGTGACATTTTCGCAAACCTCGATCGTGAGAAAATGAAT
ATAAAAAACGCCCATAAAAGATCAATACACGCTACGGATATATACAATAT
TCGGCCACCGTATAAATGGTAAACATAGCCACCGAAAGAGTTCCCTATAA
TCCAACCAATTCCTGTCTGGATAGAATCCATAATGGCGTAAATGGATGTT
AAGATGTCGGGATCTGTGATACTTTTGATGTAAGTGACAGCTGCCGCATT
TAAGACAGCCCTGTTTAAGAGGTGTAGAGGCTGCACTGTTAACACTAACC
ATGGGTTTCCCATGAACCCATAGACCATATATCTGATGGTGTAAGCGATA
AACCCAATAATGAAGACGTTCCAAGGACCTCCGAAAAACTTGATCAATTT
AGTAGAGAAGAAGTAACCAAGCATCAAAGACATCAAAGCGGTCGAGTACG
CCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020655XLOC_020655Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035363-proteinTCONS_00035363-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035363-exon-sc0001302-1491911889:44817..45661TCONS_00035363-exon-sc0001302-1491911889:44817..45661Clytia hemisphaericaexon
TCONS_00035363-exon-sc0001302-1510915933:44817..45661TCONS_00035363-exon-sc0001302-1510915933:44817..45661Clytia hemisphaericaexon
TCONS_00035363-exon-sc0001302-1575043694:44817..45661TCONS_00035363-exon-sc0001302-1575043694:44817..45661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001302supercontigsc0001302:44817..45661 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.613609	0.707159	0.757919	0.556129	14.5938	9.21391	8.96467	8.8626	8.36317	7.21998	5.73702	3.81652	0.227703	0.539391	0.696855	0.713839	2.86106	3.10786	0.497531	0.49641	0.809007	0.552447	0.639592	0.609854	0.479131	0.748322	0.305956	0.489787	0.909093	0.883133
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024989MFS_assoc_dom
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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