TCONS_00035361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035361
Unique NameTCONS_00035361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035361 ID=TCONS_00035361|Name=TCONS_00035361|organism=Clytia hemisphaerica|type=transcript|length=838bp
TGTAATGATCACCTGGAGAGCAACCACCAGCCCACCAGCCTGCATTTTTA
GATCAAAACAGAATGCCAAAATGACCGGTCGCAGCTGTCGTGCATACGGT
GAGGAGTTTGAATTTCAGGACTCTGAATATGCCGACGACACAGCCCTCGT
TTTCTACTCAAGAGAAGACGCTAGTGTTGGTATACCGCTCTGTATGACCC
ATTTCGATTGTTTTGGAATGGAGATCCATTCGGGGCCACCTGATTCGAAA
TCTGTCGTTCTTTTCTGCTCGAAACCACCATGTATGTATGACGATCCTGC
AACCTTTGATCAAGCTGACCTATCGAATATAGTTTTCGGTGACAGATTTA
TTCCTGATGTTCCTTATTAACCTTGGTAGCGTCATAAGTTCCGATTCCTC
AGATGATCTTGATGTTGATCGTAGAATACAGAAAGCGTGTAATGCATTCG
GTATGatgaaaagttcattattttccTGCACTAAGATAAAGCTTAGTGTC
AAAGCAAAAGTTTATCAAGCATTTATTTTACACATCTTATTATATGGTGT
TGAATGTTGGAGCTTGACGGAAAAGCTTCTTTATAAATTGAGAGCATTTC
ACCATCGGTGTGTAAGAAGTATTTGTCGTGTTACTTTACGTACTCGATCG
TTAACGTACATCTGATCTTCTCGATTAACTTTCTCTGGAATCGATAGACA
CCTACATTTGTCGTCAACAGCTCAGATGGGCTGGACATATAATGCGCATG
CCTTGGAATCGCCTTCCACGGAAAATGTTGTCCTGCTGGGTCCGTTCTAA
ACGTCCTCGTGGTGCTCCGAGGTACACATATGTATGGT
Run BLAST on NCBI

protein sequence of TCONS_00035361-protein

>TCONS_00035361-protein ID=TCONS_00035361-protein|Name=TCONS_00035361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
VMITWRATTSPPACIFRSKQNAKMTGRSCRAYGEEFEFQDSEYADDTALV
FYSREDASVGIPLCMTHFDCFGMEIHSGPPDSKSVVLFCSKPPCMYDDPA
TFDQADLSNIVFGDRFIPDVPY
Run BLAST on NCBI

transcript from alignment at sc0001302:34327..35164

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035361 ID=TCONS_00035361|Name=TCONS_00035361|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at sc0001302:34327..35164 (Clytia hemisphaerica)
ACCATACATATGTGTACCTCGGAGCACCACGAGGACGTTTAGAACGGACC
CAGCAGGACAACATTTTCCGTGGAAGGCGATTCCAAGGCATGCGCATTAT
ATGTCCAGCCCATCTGAGCTGTTGACGACAAATGTAGGTGTCTATCGATT
CCAGAGAAAGTTAATCGAGAAGATCAGATGTACGTTAACGATCGAGTACG
TAAAGTAACACGACAAATACTTCTTACACACCGATGGTGAAATGCTCTCA
ATTTATAAAGAAGCTTTTCCGTCAAGCTCCAACATTCAACACCATATAAT
AAGATGTGTAAAATAAATGCTTGATAAACTTTTGCTTTGACACTAAGCTT
TATCTTAGTGCAggaaaataatgaacttttcatCATACCGAATGCATTAC
ACGCTTTCTGTATTCTACGATCAACATCAAGATCATCTGAGGAATCGGAA
CTTATGACGCTACCAAGGTTAATAAGGAACATCAGGAATAAATCTGTCAC
CGAAAACTATATTCGATAGGTCAGCTTGATCAAAGGTTGCAGGATCGTCA
TACATACATGGTGGTTTCGAGCAGAAAAGAACGACAGATTTCGAATCAGG
TGGCCCCGAATGGATCTCCATTCCAAAACAATCGAAATGGGTCATACAGA
GCGGTATACCAACACTAGCGTCTTCTCTTGAGTAGAAAACGAGGGCTGTG
TCGTCGGCATATTCAGAGTCCTGAAATTCAAACTCCTCACCGTATGCACG
ACAGCTGCGACCGGTCATTTTGGCATTCTGTTTTGATCTAAAAATGCAGG
CTGGTGGGCTGGTGGTTGCTCTCCAGGTGATCATTACA

Coding sequence (CDS) from alignment at sc0001302:34327..35164

>TCONS_00035361 ID=TCONS_00035361|Name=TCONS_00035361|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0001302:34327..35164 (Clytia hemisphaerica)
TTAATAAGGAACATCAGGAATAAATCTGTCACCGAAAACTATATTCGATA
GGTCAGCTTGATCAAAGGTTGCAGGATCGTCATACATACATGGTGGTTTC
GAGCAGAAAAGAACGACAGATTTCGAATCAGGTGGCCCCGAATGGATCTC
CATTCCAAAACAATCGAAATGGGTCATACAGAGCGGTATACCAACACTAG
CGTCTTCTCTTGAGTAGAAAACGAGGGCTGTGTCGTCGGCATATTCAGAG
TCCTGAAATTCAAACTCCTCACCGTATGCACGACAGCTGCGACCGGTCAT
TTTGGCATTCTGTTTTGATCTAAAAATGCAGGCTGGTGGGCTGGTGGTTG
CTCTCCAGGTGATCATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020653XLOC_020653Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035361-proteinTCONS_00035361-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035361-exon-sc0001302-1491911889:34327..35164TCONS_00035361-exon-sc0001302-1491911889:34327..35164Clytia hemisphaericaexon
TCONS_00035361-exon-sc0001302-1510915933:34327..35164TCONS_00035361-exon-sc0001302-1510915933:34327..35164Clytia hemisphaericaexon
TCONS_00035361-exon-sc0001302-1575043694:34327..35164TCONS_00035361-exon-sc0001302-1575043694:34327..35164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001302supercontigsc0001302:34327..35164 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.390523	0.324835	0.358148	0.213341	4.1595	4.13537	2.18743	3.60628	1.14019	2.42498	0.848976	1.17928	1.53321	1.63788	0.859631	0.83679	1.96719	1.53541	1.86815	1.28738	1.21008	1.09746	0.701328	0.573917	1.58659	1.98998	0.988832	0.502306	0.709955	0.478154
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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