TCONS_00035356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035356
Unique NameTCONS_00035356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035356 ID=TCONS_00035356|Name=TCONS_00035356|organism=Clytia hemisphaerica|type=transcript|length=411bp
CTTCGCGTGAACAAGATGTCAGTTCAAAGAACACTGAGAGATGGCACTGT
AAGAAATGGATTGAGGAATTTCCTCATTCCAATTTTTAAAGATCGGTTCT
ACATAGTTTCTATTCGATGTTTATGGGACGTCGTTGAAAAAGATCTAGGA
GTAGCTGCATATAATATCGATACAAAGCATCTCGAACTGGAGAATATTGT
TGACTCCTTTGAAAATGTTGTGGCATACTTTTCTTGCACGTGTGCAATGG
AATCAAACAATTTGAGAGAGGAGCTGAAGAAAAAACGGGATGTTGTTGGT
TATGAAAATGACAATGAATTTGAAGATTACGATGAGGACGACTCGCTTAT
ACCAGGTAACGAAGATTTCtctatatttcttattttttaactGACGTCCA
TTAATTTCCTA
Run BLAST on NCBI

protein sequence of TCONS_00035356-protein

>TCONS_00035356-protein ID=TCONS_00035356-protein|Name=TCONS_00035356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
LRVNKMSVQRTLRDGTVRNGLRNFLIPIFKDRFYIVSIRCLWDVVEKDLG
VAAYNIDTKHLELENIVDSFENVVAYFSCTCAMESNNLREELKKKRDVVG
YENDNEFEDYDEDDSLIPGNEDFSIFLIF
Run BLAST on NCBI

transcript from alignment at sc0001301:65255..65665

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035356 ID=TCONS_00035356|Name=TCONS_00035356|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0001301:65255..65665 (Clytia hemisphaerica)
TAGGAAATTAATGGACGTCagttaaaaaataagaaatatagaGAAATCTT
CGTTACCTGGTATAAGCGAGTCGTCCTCATCGTAATCTTCAAATTCATTG
TCATTTTCATAACCAACAACATCCCGTTTTTTCTTCAGCTCCTCTCTCAA
ATTGTTTGATTCCATTGCACACGTGCAAGAAAAGTATGCCACAACATTTT
CAAAGGAGTCAACAATATTCTCCAGTTCGAGATGCTTTGTATCGATATTA
TATGCAGCTACTCCTAGATCTTTTTCAACGACGTCCCATAAACATCGAAT
AGAAACTATGTAGAACCGATCTTTAAAAATTGGAATGAGGAAATTCCTCA
ATCCATTTCTTACAGTGCCATCTCTCAGTGTTCTTTGAACTGACATCTTG
TTCACGCGAAG

Coding sequence (CDS) from alignment at sc0001301:65255..65665

>TCONS_00035356 ID=TCONS_00035356|Name=TCONS_00035356|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0001301:65255..65665 (Clytia hemisphaerica)
ttaaaaaataagaaatatagaGAAATCTTCGTTACCTGGTATAAGCGAGT
CGTCCTCATCGTAATCTTCAAATTCATTGTCATTTTCATAACCAACAACA
TCCCGTTTTTTCTTCAGCTCCTCTCTCAAATTGTTTGATTCCATTGCACA
CGTGCAAGAAAAGTATGCCACAACATTTTCAAAGGAGTCAACAATATTCT
CCAGTTCGAGATGCTTTGTATCGATATTATATGCAGCTACTCCTAGATCT
TTTTCAACGACGTCCCATAAACATCGAATAGAAACTATGTAGAACCGATC
TTTAAAAATTGGAATGAGGAAATTCCTCAATCCATTTCTTACAGTGCCAT
CTCTCAGTGTTCTTTGAACTGACATCTTGTTCACGCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020650XLOC_020650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035356-exon-sc0001301-1491911889:65255..65665TCONS_00035356-exon-sc0001301-1491911889:65255..65665Clytia hemisphaericaexon
TCONS_00035356-exon-sc0001301-1510915933:65255..65665TCONS_00035356-exon-sc0001301-1510915933:65255..65665Clytia hemisphaericaexon
TCONS_00035356-exon-sc0001301-1575043694:65255..65665TCONS_00035356-exon-sc0001301-1575043694:65255..65665Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035356-proteinTCONS_00035356-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001301supercontigsc0001301:65255..65665 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.03955	2.74031	0.79544	0.389107	1.4211	0.561486	1.12902	0.422788	0.74001	1.4666	2.13527	1.28667	0.700846	0.849141	0.398919	0.428102	0	0	0	0	0.169811	0.496968	1.20826	1.09848	1.13141	1.00976	0	0	1.36457	0.595834
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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