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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035349 ID=TCONS_00035349|Name=TCONS_00035349|organism=Clytia hemisphaerica|type=transcript|length=1648bp
AGAAAATTAGGCATTACGAAATTGCTaaaaacattaaattcaaaTAATAA
CAATTCCTGTGGTTTTATCATTAAAATAACatctaaaattcataaaatac
tTCGTCTCCAATCAATTGTCTCAACAATACAACACCGATATTTGttaagt
ttatcgtggcttggatcgcGAGATTAACGGTTGGCTACGTTTGGAGAGGT
GCTTCTCTCATCATCGGACACAACACCCTTCAACGTTTGATTTATCATAA
TCAAAAGTATCTATATAAGTACAACCTTGCAATGAAGTGGTTATCCggaa
tttaaaaaatatctaGCTCGAttgaaattagagtttgaatatatttttag
tacTATACATATACATTGTGGCTTGTATCAATTctttgaatcaaaataat
aagCCTCTTCTGGAAAGTTttaggccggaaaaaaatgGTCGAAATTCCTT
CTCCAGGGGGTCAACGATGCTTTACTTGGGGTTTAACCCGGGGGATAAAA
AATCTGTCCAGCAGGAAGGGGAGCACTTTCCATACACTTTCTTTCTGGAA
GAGTCCAAAAAATATGATTCAAATTgttattttccatttcaatAAACTCC
AAGCGTGACAAACATTAACAGGAANGAATTGTTATTTTCCATTTCCATAA
ACTCCAAGCGTGACAAACATTAACAGGAATCCACGAAAACCAGGGATCAT
TTTGGCGTAGATGAAAACGTTCAATATGCTGTTCATATAAAATATACCAA
ATAACGGGTATGTTATTGCAGAATACACCATGAATAAATCATAAAACAAC
GGTTTGGACAATTGAAGATATATATCTAACACCCATGTGAATAAGATGTG
AATTCGTGTTGGAATTACAGTGATAATGAAAATGGCAATTAACCCGTTGA
CGGTCCTCAATGCTGATCTATTTCTCGTGCGACTCTGGGGATTGGGCGGG
AAAGATGAATGGTTCTCgtcgaatttcatttttttcttcattttataaTA
TAAGATAAGCATTATACCAGCAGGTAGAAAACTATCCATGATAAAGTTAC
ATAAAATTTGCACTAGACCAAATGTTAAACATAATTGAAACCCACGGTAC
TCAATAACTTTGGTATTAATAAAACTAAAAGTATTAAGTACTGGCGGCAC
AATCCAAACCAACAAACAAACGACcccatatttctttttattgagtttgt
aaGCGTGTAAAGGGTATGAAATTGTGCGATACCTGGCGAAAGATATCAAT
ACCAATAACCAGCTAGATATTATGGGCAGAGCATTTCCAAGAAAAATTCT
CAAGAAAACACATGCAAATTCACCATATTTCCATGACGGTTGACTGATAA
GAGGGTAATTTATTGAGGTACCGACACTAACGAATAAATCAGCTACGGCA
AGGTTGATTATAAGGAAATGGTACACACtcattttatttaatttcttgAA
GTTAATTTTGACGAAATATATAATGACAAGGATATTACAAATTGAACCGA
ACCCAAATATAACTGGATCTATATAAGTTAATGAGTAGGTTATCATTGTC
TCTGCAATTTGAGAAAGCTTGACTTCCAGAGGTTGACGTAGAGGTGAAGT
ATAGTTTATAGTACCGTTGCTTAAGCTAAAATTCATCTTTCAAtctga Run BLAST on NCBI protein sequence of TCONS_00035349-protein >TCONS_00035349-protein ID=TCONS_00035349-protein|Name=TCONS_00035349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MNFSLSNGTINYTSPLRQPLEVKLSQIAETMITYSLTYIDPVIFGFGSIC
NILVIIYFVKINFKKLNKMSVYHFLIINLAVADLFVSVGTSINYPLISQP
SWKYGEFACVFLRIFLGNALPIISSWLLVLISFARYRTISYPLHAYKLNK
KKYGVVCLLVWIVPPVLNTFSFINTKVIEYRGFQLCLTFGLVQILCNFIM
DSFLPAGIMLILYYKMKKKMKFDENHSSFPPNPQSRTRNRSALRTVNGLI
AIFIITVIPTRIHILFTWVLDIYLQLSKPLFYDLFMVYSAITYPLFGIFY
MNSILNVFIYAKMIPGFRGFLLMFVTLGVYGNGK Run BLAST on NCBI transcript from alignment at sc0001298:69025..70672 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035349 ID=TCONS_00035349|Name=TCONS_00035349|organism=Clytia hemisphaerica|type=transcript|length=1648bp|location=Sequence derived from alignment at sc0001298:69025..70672 (Clytia hemisphaerica)
tcagaTTGAAAGATGAATTTTAGCTTAAGCAACGGTACTATAAACTATAC
TTCACCTCTACGTCAACCTCTGGAAGTCAAGCTTTCTCAAATTGCAGAGA
CAATGATAACCTACTCATTAACTTATATAGATCCAGTTATATTTGGGTTC
GGTTCAATTTGTAATATCCTTGTCATTATATATTTCGTCAAAATTAACTT
caagaaattaaataaaatgaGTGTGTACCATTTCCTTATAATCAACCTTG
CCGTAGCTGATTTATTCGTTAGTGTCGGTACCTCAATAAATTACCCTCTT
ATCAGTCAACCGTCATGGAAATATGGTGAATTTGCATGTGTTTTCTTGAG
AATTTTTCTTGGAAATGCTCTGCCCATAATATCTAGCTGGTTATTGGTAT
TGATATCTTTCGCCAGGTATCGCACAATTTCATACCCTTTACACGCttac
aaactcaataaaaagaaatatgggGTCGTTTGTTTGTTGGTTTGGATTGT
GCCGCCAGTACTTAATACTTTTAGTTTTATTAATACCAAAGTTATTGAGT
ACCGTGGGTTTCAATTATGTTTAACATTTGGTCTAGTGCAAATTTTATGT
AACTTTATCATGGATAGTTTTCTACCTGCTGGTATAATGCTTATCTTATA
ttataaaatgaagaaaaaaatgaaattcgacGAGAACCATTCATCTTTCC
CGCCCAATCCCCAGAGTCGCACGAGAAATAGATCAGCATTGAGGACCGTC
AACGGGTTAATTGCCATTTTCATTATCACTGTAATTCCAACACGAATTCA
CATCTTATTCACATGGGTGTTAGATATATATCTTCAATTGTCCAAACCGT
TGTTTTATGATTTATTCATGGTGTATTCTGCAATAACATACCCGTTATTT
GGTATATTTTATATGAACAGCATATTGAACGTTTTCATCTACGCCAAAAT
GATCCCTGGTTTTCGTGGATTCCTGTTAATGTTTGTCACGCTTGGAGTTT
ATGGAAATGGAAAATAACAATTCNTTCCTGTTAATGTTTGTCACGCTTGG
AGTTTattgaaatggaaaataacAATTTGAATCATATTTTTTGGACTCTT
CCAGAAAGAAAGTGTATGGAAAGTGCTCCCCTTCCTGCTGGACAGATTTT
TTATCCCCCGGGTTAAACCCCAAGTAAAGCATCGTTGACCCCCTGGAGAA
GGAATTTCGACcatttttttccggcctaaAACTTTCCAGAAGAGGcttat
tattttgattcaaagAATTGATACAAGCCACAATGTATATGTATAgtact
aaaaatatattcaaactctaatttcaaTCGAGCtagatattttttaaatt
ccGGATAACCACTTCATTGCAAGGTTGTACTTATATAGATACTTTTGATT
ATGATAAATCAAACGTTGAAGGGTGTTGTGTCCGATGATGAGAGAAGCAC
CTCTCCAAACGTAGCCAACCGTTAATCTCgcgatccaagccacgataaac
ttaaCAAATATCGGTGTTGTATTGTTGAGACAATTGATTGGAGACGAagt
attttatgaattttagatGTTATTTTAATGATAAAACCACAGGAATTGTT
ATTAtttgaatttaatgtttttAGCAATTTCGTAATGCCTAATTTTCT Coding sequence (CDS) from alignment at sc0001298:69025..70672 >TCONS_00035349 ID=TCONS_00035349|Name=TCONS_00035349|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0001298:69025..70672 (Clytia hemisphaerica)
ATGAATTTTAGCTTAAGCAACGGTACTATAAACTATACTTCACCTCTACG
TCAACCTCTGGAAGTCAAGCTTTCTCAAATTGCAGAGACAATGATAACCT
ACTCATTAACTTATATAGATCCAGTTATATTTGGGTTCGGTTCAATTTGT
AATATCCTTGTCATTATATATTTCGTCAAAATTAACTTcaagaaattaaa
taaaatgaGTGTGTACCATTTCCTTATAATCAACCTTGCCGTAGCTGATT
TATTCGTTAGTGTCGGTACCTCAATAAATTACCCTCTTATCAGTCAACCG
TCATGGAAATATGGTGAATTTGCATGTGTTTTCTTGAGAATTTTTCTTGG
AAATGCTCTGCCCATAATATCTAGCTGGTTATTGGTATTGATATCTTTCG
CCAGGTATCGCACAATTTCATACCCTTTACACGCttacaaactcaataaa
aagaaatatgggGTCGTTTGTTTGTTGGTTTGGATTGTGCCGCCAGTACT
TAATACTTTTAGTTTTATTAATACCAAAGTTATTGAGTACCGTGGGTTTC
AATTATGTTTAACATTTGGTCTAGTGCAAATTTTATGTAACTTTATCATG
GATAGTTTTCTACCTGCTGGTATAATGCTTATCTTATAttataaaatgaa
gaaaaaaatgaaattcgacGAGAACCATTCATCTTTCCCGCCCAATCCCC
AGAGTCGCACGAGAAATAGATCAGCATTGAGGACCGTCAACGGGTTAATT
GCCATTTTCATTATCACTGTAATTCCAACACGAATTCACATCTTATTCAC
ATGGGTGTTAGATATATATCTTCAATTGTCCAAACCGTTGTTTTATGATT
TATTCATGGTGTATTCTGCAATAACATACCCGTTATTTGGTATATTTTAT
ATGAACAGCATATTGAACGTTTTCATCTACGCCAAAATGATCCCTGGTTT
TCGTGGATTCCTGTTAATGTTTGTCACGCTTGGAGTTTATGGAAATGGAA
AATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035349-exon-sc0001298-1491911889:69025..70672 | TCONS_00035349-exon-sc0001298-1491911889:69025..70672 | Clytia hemisphaerica | exon |
| TCONS_00035349-exon-sc0001298-1510915933:69025..70672 | TCONS_00035349-exon-sc0001298-1510915933:69025..70672 | Clytia hemisphaerica | exon |
| TCONS_00035349-exon-sc0001298-1575043694:69025..70672 | TCONS_00035349-exon-sc0001298-1575043694:69025..70672 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001298 | supercontig | sc0001298:69025..70672 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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