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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035344 ID=TCONS_00035344|Name=TCONS_00035344|organism=Clytia hemisphaerica|type=transcript|length=1572bp
ACCATAATCATAAAATGGGAGTTGATCGAATTAAAAATCCGATTATTTAA
CAATTGAgtaaagatttaaaaacaaacccaGCTAATAAAATAACTTGAAA
GTTAGGTATTTATTTAGGAAGTAGTAATTCTGGTGTAAGCTGGATGTAAA
GAAAGGAAGGATAAAACGCGAAAACTGAAAGCAAATATGACCGGAAAATA
TCAGTGGTGTAGCAACTGTCAAGCGTTCCAAATGGATGAACAACCACACA
AAGGTCACCAACTGGTAAACCTTGGAGACGATCTCATCAAAACCATTTCA
GCGTTGGACAATATCATCGAGTATGGTCAAGATGCTGCAGCTTCAATCGA
ACAGGATGTAGCGAACGCTCGTCGCGTCCAATCAGAGATACAATCGATGC
GTGAGAAATTCAAAGCCACCTTGATGTCACGGATTGAAAAAATCGTTCAA
GATCTACGCGTCGCTTTGGATGAGCAATCAATGCAGCTGCTTGGAGATGT
CGATAAAAAGGTCAGCATAATGGAAGAAAATGCTCGTAAAGTGATTCAAA
CATCACGCATGAAGCTGGATACGACGAATACTTTCTTGGAGAAAGCAGCC
ACGGCTTTACCTGACGATAATGGTAATTTTGAGGAGAAGCAATTAAAAGA
CATTTACCAGCACTATAAAACCTTACAAAAAGTTGTCAATCAAGAGAAAC
CGAAAGTAGAATCCGTTTCTGTTGATATCAAGTTTCCAAAtacaatgaaa
gtgaaaacgGAATGCCGGGAATTATCGAAACGGATTATCGGGGAAATAGC
AAACACTAAACGACCGAGTTTATTAGACGCTCAACGAGCGAGCATTGATG
TTGCGAATATAAACGATTTTAAAGACTAGTAActactttcaatttttcga
gTTTACTTCTCGTGTGTTTGTGACGTTTCAGTGGGAgaaaaatgattgtt
ttttgtGGTTAATACACAGCCACCCCTAGTTATATGTGTGGCATTGAAGG
GTTCAAAAGGTAATCACAATATTGATTTCCTATAtccaaaaacatagaaa
aataacaACTGTTGGACGACCAGTAACGAAAAATTATTTAACAGTCGAGA
AATGAATTTTGTCAAAAACGAGATTATCATCTCGGTGAGGCAGACTTTAT
GTAATTAAGGACGCCTTAAATCaatcaaatcttaaaaaatgtcTCCTTTA
CTCAACAATGTAATATTTAAAATACCGTTAGGCATCATATGACAAACTAC
GTGATGGAAAACATTTATCTTTGATACTAAGGGATGTAATCCTCTCATAA
ATATGCTTTAAATGGTAGTTAATCTATAAATCAAAGTAAGTTTTACTTat
ataaaaatcaagaaaatctttCTGTACAGCAGATCGGATAGGTAGCCAGG
GTAAATGTTCTAAGTTCCAAGACATCTATTCGGAGGTTCTTTCAAGTATA
GCCCAACCTTGAAGAAATACCCTTACAGTATTAGGattatttagatattt
tttcctaaaaattacatgtgtataaaaatattcagtagtaaaataatata
aattttgtaTATTATTAGTGTC Run BLAST on NCBI protein sequence of TCONS_00035344-protein >TCONS_00035344-protein ID=TCONS_00035344-protein|Name=TCONS_00035344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MTGKYQWCSNCQAFQMDEQPHKGHQLVNLGDDLIKTISALDNIIEYGQDA
AASIEQDVANARRVQSEIQSMREKFKATLMSRIEKIVQDLRVALDEQSMQ
LLGDVDKKVSIMEENARKVIQTSRMKLDTTNTFLEKAATALPDDNGNFEE
KQLKDIYQHYKTLQKVVNQEKPKVESVSVDIKFPNTMKVKTECRELSKRI
IGEIANTKRPSLLDAQRASIDVANINDFKD Run BLAST on NCBI transcript from alignment at sc0001298:65039..67236- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035344 ID=TCONS_00035344|Name=TCONS_00035344|organism=Clytia hemisphaerica|type=transcript|length=2198bp|location=Sequence derived from alignment at sc0001298:65039..67236- (Clytia hemisphaerica)
ACCATAATCATAAAATGGGAGTTGATCGAATTAAAAATCCGATTATTTAA
CAATTGAGTAAAGATTTAAAAACAAACCCAGCTAATAAAATAACTTGAAA
GTTAGGTATTTATTTAGGAAGTAGTAATTCTGGTGTAAGCTGGATGTAAA
GAAAGGAAGGATAAAACGCGAAAACTGAAAGCAAATATGACCGGTAAGTA
CGGAAGAATTCAAGTCTACAGAAGTGAAAATATTCGATAATTTATCCTAG
TATCTATCGCACTGCTTTCTCTAGTTTGTTTATCTTTTAGGTGAGTTATC
GTCTTAGATAGCTTACTCATTGTTTTCAATCTATTGGTATTCGATTAATA
ATTGCTCCTCTTTGGCTTTATCATACATTTTTTAGATCAAAATCGAAGCA
CGTATTACATGTAAACAAACACTAGCTTTCAAATGTAAACAAACTTCAGG
CCTTTGAGGAGCGATTGAGGAAATACTTGTCAGTTTGTGGCTAACTTAAA
TCAGTCATTAAAATGATGTATGACTTCTTCAATAACATAAAACAAAGGCA
AGATTCCAGGCTACTTGTTAACCTCTGATCTAGAAGAGTCTAGTGAACAA
AATAAATTTCACAAAGGCTTAAAATTGGATCGAAAGAGTTAAGACTTGAG
GTTATGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGGGGGGGGGGGGG
TATTTAAGAAAACAATGTTTTGAAATATTATTTACATCAATGATTAAGAC
AAATTAATTCTCTTTCTAGGAAAATATCAGTGGTGTAGCAACTGTCAAGC
GTTCCAAATGGATGAACAACCACACAAAGGTCACCAACTGGTAAACCTTG
GAGACGATCTCATCAAAACCATTTCAGCGTTGGACAATATCATCGAGTAT
GGTCAAGATGCTGCAGCTTCAATCGAACAGGATGTAGCGAACGCTCGTCG
CGTCCAATCAGAGATACAATCGATGCGTGAGAAATTCAAAGCCACCTTGA
TGTCACGGATTGAAAAAATCGTTCAAGATCTACGCGTCGCTTTGGATGAG
CAATCAATGCAGCTGCTTGGAGATGTCGATAAAAAGGTCAGCATAATGGA
AGAAAATGCTCGTAAAGTGATTCAAACATCACGCATGAAGCTGGATACGA
CGAATACTTTCTTGGAGAAAGCAGCCACGGCTTTACCTGACGATAATGGT
AATTTTGAGGAGAAGCAATTAAAAGACATTTACCAGCACTATAAAACCTT
ACAAAAAGTTGTCAATCAAGAGAAACCGAAAGTAGAATCCGTTTCTGTTG
ATATCAAGTTTCCAAATACAATGAAAGTGAAAACGGAATGCCGGGAATTA
TCGAAACGGATTATCGGGGAAATAGCAAACACTAAACGACCGAGTTTATT
AGACGCTCAACGAGCGAGCATTGATGTTGCGAATATAAACGATTTTAAAG
ACTAGTAACTACTTTCAATTTTTCGAGTTTACTTCTCGTGTGTTTGTGAC
GTTTCAGTGGGAGAAAAATGATTGTTTTTTGTGGTTAATACACAGCCACC
CCTAGTTATATGTGTGGCATTGAAGGGTTCAAAAGGTAATCACAATATTG
ATTTCCTATATCCAAAAACATAGAAAAATAACAACTGTTGGACGACCAGT
AACGAAAAATTATTTAACAGTCGAGAAATGAATTTTGTCAAAAACGAGAT
TATCATCTCGGTGAGGCAGACTTTATGTAATTAAGGACGCCTTAAATCAA
TCAAATCTTAAAAAATGTCTCCTTTACTCAACAATGTAATATTTAAAATA
CCGTTAGGCATCATATGACAAACTACGTGATGGAAAACATTTATCTTTGA
TACTAAGGGATGTAATCCTCTCATAAATATGCTTTAAATGGTAGTTAATC
TATAAATCAAAGTAAGTTTTACTTATATAAAAATCAAGAAAATCTTTCTG
TACAGCAGATCGGATAGGTAGCCAGGGTAAATGTTCTAAGTTCCAAGACA
TCTATTCGGAGGTTCTTTCAAGTATAGCCCAACCTTGAAGAAATACCCTT
ACAGTATTAGGATTATTTAGATATTTTTTCCTAAAAATTACATGTGTATA
AAAATATTCAGTAGTAAAATAATATAAATTTTGTATATTATTAGTGTC Coding sequence (CDS) from alignment at sc0001298:65039..67236- >TCONS_00035344 ID=TCONS_00035344|Name=TCONS_00035344|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0001298:65039..67236- (Clytia hemisphaerica)
GAAAATATCAGTGGTGTAGCAACTGTCAAGCGTTCCAAATGGATGAACAA
CCACACAAAGGTCACCAACTGGTAAACCTTGGAGACGATCTCATCAAAAC
CATTTCAGCGTTGGACAATATCATCGAGTATGGTCAAGATGCTGCAGCTT
CAATCGAACAGGATGTAGCGAACGCTCGTCGCGTCCAATCAGAGATACAA
TCGATGCGTGAGAAATTCAAAGCCACCTTGATGTCACGGATTGAAAAAAT
CGTTCAAGATCTACGCGTCGCTTTGGATGAGCAATCAATGCAGCTGCTTG
GAGATGTCGATAAAAAGGTCAGCATAATGGAAGAAAATGCTCGTAAAGTG
ATTCAAACATCACGCATGAAGCTGGATACGACGAATACTTTCTTGGAGAA
AGCAGCCACGGCTTTACCTGACGATAATGGTAATTTTGAGGAGAAGCAAT
TAAAAGACATTTACCAGCACTATAAAACCTTACAAAAAGTTGTCAATCAA
GAGAAACCGAAAGTAGAATCCGTTTCTGTTGATATCAAGTTTCCAAATAC
AATGAAAGTGAAAACGGAATGCCGGGAATTATCGAAACGGATTATCGGGG
AAATAGCAAACACTAAACGACCGAGTTTATTAGACGCTCAACGAGCGAGC
ATTGATGTTGCGAATATAAACGATTTTAAAGACTAGATGACCGGAAAATA
TCAGTGGTGTAGCAACTGTCAAGCGTTCCAAATGGATGAACAACCACACA
AAGGTCACCAACTGGTAAACCTTGGAGACGATCTCATCAAAACCATTTCA
GCGTTGGACAATATCATCGAGTATGGTCAAGATGCTGCAGCTTCAATCGA
ACAGGATGTAGCGAACGCTCGTCGCGTCCAATCAGAGATACAATCGATGC
GTGAGAAATTCAAAGCCACCTTGATGTCACGGATTGAAAAAATCGTTCAA
GATCTACGCGTCGCTTTGGATGAGCAATCAATGCAGCTGCTTGGAGATGT
CGATAAAAAGGTCAGCATAATGGAAGAAAATGCTCGTAAAGTGATTCAAA
CATCACGCATGAAGCTGGATACGACGAATACTTTCTTGGAGAAAGCAGCC
ACGGCTTTACCTGACGATAATGGTAATTTTGAGGAGAAGCAATTAAAAGA
CATTTACCAGCACTATAAAACCTTACAAAAAGTTGTCAATCAAGAGAAAC
CGAAAGTAGAATCCGTTTCTGTTGATATCAAGTTTCCAAATACAATGAAA
GTGAAAACGGAATGCCGGGAATTATCGAAACGGATTATCGGGGAAATAGC
AAACACTAAACGACCGAGTTTATTAGACGCTCAACGAGCGAGCATTGATG
TTGCGAATATAAACGATTTTAAAGACTAGATGACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035344-exon-sc0001298-1575043694:67044..67236 | TCONS_00035344-exon-sc0001298-1575043694:67044..67236 | Clytia hemisphaerica | exon |
| TCONS_00035344-exon-sc0001298-1575043694:65039..66417 | TCONS_00035344-exon-sc0001298-1575043694:65039..66417 | Clytia hemisphaerica | exon |
| TCONS_00035344-exon-sc0001298-1510915933:67044..67236 | TCONS_00035344-exon-sc0001298-1510915933:67044..67236 | Clytia hemisphaerica | exon |
| TCONS_00035344-exon-sc0001298-1510915933:65039..66417 | TCONS_00035344-exon-sc0001298-1510915933:65039..66417 | Clytia hemisphaerica | exon |
| TCONS_00035344-exon-sc0001298-1491911889:67044..67236 | TCONS_00035344-exon-sc0001298-1491911889:67044..67236 | Clytia hemisphaerica | exon |
| TCONS_00035344-exon-sc0001298-1491911889:65039..66417 | TCONS_00035344-exon-sc0001298-1491911889:65039..66417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001298 | supercontig | sc0001298:65039..67236 - |
Blast
The following BLAST results are available for this feature:
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