TCONS_00035343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035343
Unique NameTCONS_00035343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035343 ID=TCONS_00035343|Name=TCONS_00035343|organism=Clytia hemisphaerica|type=transcript|length=2415bp
TTTTAATCAAATGGTGCACATGCTGTTAAATGTAAGAAATAATACAATAT
CAAAAGCAAAGTTTCTAATTTtcctatttcaaaatttcaacctattacaa
aattacaatactccgaaaatggttgaaatataGTATGCCTAAAATTGAAT
GTTACTTCTAGGTAAGAAAGATAATGATCCTATAAGAAGCAAATATTGAC
TCATCAGACCTTTTGAgttcaaaaagaaattcttgTCTTGGCtttggaaa
aagaaaactttcggATGAGGTggttaagaaaataaaaatgtgaAATTACA
TTAAAAAATACCGTTTAAGCAAGTGATACGCTAGTGTAGAGAAAATACAA
AGATACTCCTTAAACTTTATAAAAGAAATTACGTTTAGTTTAAGTATCTA
tactaaaattttaaaaaatgtttgtttacaattCAACACGTTTTNTACGT
TAGTGTAGAGAAAATACAAAGATACTTCTTAAACTTTATAAAAGAAATTA
CGTTTAGTTTAAGTATAACTATActaaaatgtttgtttacaattCGACAC
GGTTCCCTTCTGTGGAGTAGTCTTCACATTTTGTGCATTCTTCATCTTGA
CATTTTGTGAAAGGTGGGCATTTGGGTGCATCTCCTCCTCTCGAACATCG
AACAATCTTGGCATCCCATGCCAAATCATTCTTCTGCACGTCTGTGGTGG
TCACATACAGTTGCCACATGCAGCCTCCTTTCCACGGGTTTCCGTTTTCA
TAATAATCACACGAAAACGAGGTTTTGGTCGTCTGCTCATGCGTGCTGCT
CCACGTGTAGGCAACAGATGCAGCCACGCTGGCGGAAACtgtcatttttt
caaagatgaGATTTGATTCTATGGCCATTTCGACTCCCACAGAAACTTGA
GTTGTAACTTCGTTAGTATAGGAGACGGTGTTGTCGATTTCGTAGGTTAC
TGCGCCGTCTAAATTGCAGGAGATTTGGCTCCATTGNGGCAACAGATGTA
GCCACGCTGGTGGATACTTTCATGTCAACAAAGATGAGATTTGCTTCGAT
GGCCATTTCGACTGTCACAGAAACTTGACTTGTAACTTCGTTGGTATAGG
AGACGGTGTTGTCGATTTCGTATGTTACTGCGCCGTCTAAATTGCAGGAG
ATTTGGCGCCATTGTGAAGTCGGGGAGACCCAGTCTTCCGTAACCCATTC
GAACCGTTGGTCTGGAACACCTTGGCATTGATACAAGTCGATGTCACCGG
TCCCATCATTGCCTTCTACATCCAAGCATTTGCTGGTCTGCTTGCTCATG
AATGCTAGGTAGTTACCATCTGCATATTGCGATGGTGTTGACCACATTTG
ATCCGTTTGCTCAGCACACTCATATGTTTGTACGCTTTCAGCAGACTCAC
CGGTACCATCTGGATCCATACACGTGTTTGATGCCATGTTCAAAACCTCG
CCGTTCTCGTAATGCGTCCAGTATTGCTTTCGGCTATCAGTGCATGGTGT
GGTGTATATGTTTGATTTCCAACCAGTGTTATCAGCTGTCGCACACTGTC
ctgatttctgatttctcaACCGTCCAGAATTGACTACTTTCCCTCGGTTG
CGGAAGTAGAAAAATTGGTCATCGCTATTCTGGCAATTATAGATAGCGAT
ATTACCGTGGCCCCCTGAAGCATTGACGTCGACACAAAGGTTGGATTTGA
CGTTCTTGTACTCGTAACCAGTCTGTTTTATTCCACTGGCGTCAGTGTAG
GGTCGACACAAAGGTTGGATTTGACGTTCTTGTACTCGTAACCAGTCTGT
TTTATTCCACTGGCGTCAGTGTAGGATCGACTTCcaccagttttgaattt
ttgataatCAGGAACAGATGGGTAAAGTTCACAAGGTTGAAATGTCAAAT
CTCCAGTGCCAGCTCCAGTATTGCTTGGTGTTAAACAGTAATTTTTGGCC
ATGTTTCTGATCGTGCCATCATTGCAAGCAATGATTTGCTGGTCTGGTTT
TCCGTCACATGTGTAAGTCTGGACATGTCCGCTGCCATCATTGTCACTGT
CCATGCATTTGTGAGACAGCAAATTGCGCAATTCTCCAGTGCGCAATGCA
GACGGGCAATTAGCATCGCCGTGCGCCAAATAAATGGCTGAAGCGAGAAT
CATGAAGACTGCAAACATTTTGATGTGTTTGTAGTGAGTGGTGTTGTTAA
CgcctttttttagatttttatacaGTCCTCACGGAGAACTGGTTTGCTAC
GCTCCATTAATTTTTTGGGAGTATTTCAGACATCGTGGTCAAACGACCTG
CCGCAACAGACAATCGTTATTACAGCTTAATTAAACCCTCGTTTGACCAA
GGATCAGACTTGATTGGTTTACCGTGTGCAGACTTATTGTGATGAATACA
CTTTAATAATCTAAT
Run BLAST on NCBI

transcript from alignment at sc0001298:13038..18565-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035343 ID=TCONS_00035343|Name=TCONS_00035343|organism=Clytia hemisphaerica|type=transcript|length=5528bp|location=Sequence derived from alignment at sc0001298:13038..18565- (Clytia hemisphaerica)
TTTTAATCAAATGGTGCACATGCTGTGTAATTAAATGTAAGAAATAATAC
AATATCAAAAGCAAAGCCCGGGGGGGTACTAGGGCAAGATGGGTTACGGG
GATGCTCCGCTGGTCAGGGTACCTTTTTTAACCTCCACGAGTCCCAGGTA
GGGTCGCAAAAACACCAAAACAGAAAAATCAGTCCCTCGTAGGGTGCCTT
TCTTTGGAAAATTTGGGGAAAAAGCGGGAAAAAGTAGAAAATTTAGAAAA
TTTTGGAATTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAATTTCGAGT
CCCACGTAGGGTCCATTTTTCGAATCTCAGCGGAGCACCCCCGTCGGTCG
ACAAGGGTAGTACCCCCCCGGGNTTTCTTTACAGAAATATTAACCATCTG
TGAAAAATGTCTTTTAATCAAATAGTGCACATGCTGTTAAATGTAAGAAA
TAATACAATATCAAAAGCAAAGTTTCTAATTTTCCTATTTCAAAATTTCA
ACCTATTACAAAATTACAATACTCCGAAAATGGTTGAAATATAGTATGCC
TAAAATTGAATGTTACTTCTAGGTAAGAAAGATAATGATCCTATAAGAAG
CAAATATTGACTCATCAGACCTTTTGAGTTCAAAAAGAAATTCTTGTCTT
GGCTTTGGAAAAAGAAAACTTTCGGATGAGGTGGTTAAGAAAATAAAAAT
GTGAAANGACTTGTCACGAAATCTTGAAACAAGCTTTCATACGAACTCTA
TGTCAAAGTGTGTAAAACATTACATTAAAAAATACCGTTTAAGCAAGTGA
TACGCTAGTGTAGAGAAAATACAAAGATACTCCTTAAACTTTATAAAAGA
AATTACGTTTAGTTTAAGTATCTATACTAAAATTTTAAAAAATGTTTGTT
TACAATTCAACACGTTTTNTACGTTAGTGTAGAGAAAATACAAAGATACT
TCTTAAACTTTATAAAAGAAATTACGTTTAGTTTAAGTATAACTATACTA
AAATGTTTGTTTACAATTCGACACGGTTCCCTTCTGTGGAGTAGTCTTCA
CATTTTGTGCATTCTTCATCTTGACATTTTGTGAAAGGTGGGCATTTGGG
TGCATCTCCTCCTCTCGAACATCGAACAATCTTGGCATCCCATGCCAAAT
CATTCTTCTGCACGTCTGTGGTGGTCACATACAGTTGCCACATGCAGCCT
CCTTTCCACGGGTTTCCGTTTTCATAATAATCACACGAAAACGAGGTTTT
GGTCGTCTGCTCATGCGTGCTGCTCCACGTGTAGGCAACAGATGCAGCCA
CGCTGGCGGAAACTGTCATTTTTTCAAAGATGAGATTTGATTCTATGGCC
ATTTCGACTCCCACAGAAACTTGAGTTGTAACTTCGTTAGTATAGGAGAC
GGTGTTGTCGATTTCGTAGGTTACTGCGCCGTCTAAATTGCAGGAGATTT
GGCTCCATTGNGGCAACAGATGTAGCCACGCTGGTGGATACTTTCATGTC
AACAAAGATGAGATTTGCTTCGATGGCCATTTCGACTGTCACAGAAACTT
GACTTGTAACTTCGTTGGTATAGGAGACGGTGTTGTCGATTTCGTATGTT
ACTGCGCCGTCTAAATTGCAGGAGATTTGGCGCCATTGTGAAGTCGGGGA
GACCCAGTCTTCCGTAACCCATTCGAACCGTTGGTCTGGAACACCTTGGC
ATTGATACAAGTCGATGTCACCGGTCCCATCATTGCCTTCTACATCCAAG
CATTTGCTGGTCTGCTTGCTCATGAATGCTAGGTAGTTACCATCTGCATA
TTGCGATGGTGTTGACCACATTTGATCCGTTTGCTCAGCACACTCATATG
TTTGTACGCTTTCAGCAGACTCACCGGTACCATCTGGATCCATACACGTG
TTTGATGCCATGTTCAAAACCTCGCCGTTCTCGTAATGCGTCCAGTATTG
CTTTCGGCTATCAGTGCATGGTGTGGTGTATATGTTTGATTTCCAACCAG
TGTTATCAGCTGTCGCACACTGTCCTGATTTCTGATTTCTCAACCGTCCA
GAATTGACTACTTTCCCTCGGTTGCGGAAGTAGAAAAATTGGTCATCGCT
ATTCTGGCAATTATAGATAGCGATATTACCGTGGCCCCCTGAAGCATTGA
CGTCGACACAAAGGTTGGATTTGACGTTCTTGTACTCGTAACCAGTCTGT
TTTATTCCACTGGCGTCAGTGTAGGATCGACTTCCACCAGTTTTGAATTT
TTGATAATCAGGAACAGATGGGTAAAGTTCACAAGGTTGAAATGTCAAAT
CTCCAGTGCCAGCTCCAGTATTGCTTGGTGTTAAACAGTAGTTTTTNNNN
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NNNNNNNNNNTGACGTCGACACAAAGGTTGGATTTGACGTTCTTGTACTC
GTAACCAGTCTGTTTTATTCCACTGGCGTCAGTGTAGGATCGACTTCCAC
CAGTTTTGAATTTTTGATAATCAGGAACAGATGGGTAAAGTTCACAAGGT
TGAAATGTCAAATCTCCAGTGCCAGCTCCAGTATTGCTTGGTGTTAAACA
GTAATTTTTGGCCATGTTTCTGATCGTGCCATCATTGCAAGCAATGATTT
GCTGGTCTGGTTTTCCGTCACATGTGTAAGTCTGGACATGTCCGCTGCCA
TCATTGTCACTGTCCATGCATTTGTGAGACAGCAAATTGCGCAATTCTCC
AGTGCGCAATGCAGACGGGCAATTAGCATCGCCGTGCGCCAAATAAATGG
CTGAAGCGAGAATCATGAAGACTGCAAACATTTTGATGTGTTTGTAGTGA
GTGGTGTTGTTAACGCCTTTTTTTAGATTTTTATACAGTCCTCACGGAGA
ACTGGTTTGCTACGCTCCATTAATTTTTTGGGAGTATTTCAGACATCGTG
GTCAAACGACCTGCCGCAACAGACAATCGTTATTACAGCTTAATTAAACC
CTCGTTTGACCAAGGATCAGACTTGATTGGTTTACCGTGTGCAGACTTAT
TGTGATGAATACACTTTAATAATCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020637XLOC_020637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035343-exon-sc0001298-1575043694:18547..18565TCONS_00035343-exon-sc0001298-1575043694:18547..18565Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1575043694:17861..18135TCONS_00035343-exon-sc0001298-1575043694:17861..18135Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1575043694:16341..17797TCONS_00035343-exon-sc0001298-1575043694:16341..17797Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1575043694:13038..13701TCONS_00035343-exon-sc0001298-1575043694:13038..13701Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1510915933:18547..18565TCONS_00035343-exon-sc0001298-1510915933:18547..18565Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1510915933:17861..18135TCONS_00035343-exon-sc0001298-1510915933:17861..18135Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1510915933:16341..17797TCONS_00035343-exon-sc0001298-1510915933:16341..17797Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1510915933:13038..13701TCONS_00035343-exon-sc0001298-1510915933:13038..13701Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1491911889:18547..18565TCONS_00035343-exon-sc0001298-1491911889:18547..18565Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1491911889:17861..18135TCONS_00035343-exon-sc0001298-1491911889:17861..18135Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1491911889:16341..17797TCONS_00035343-exon-sc0001298-1491911889:16341..17797Clytia hemisphaericaexon
TCONS_00035343-exon-sc0001298-1491911889:13038..13701TCONS_00035343-exon-sc0001298-1491911889:13038..13701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001298supercontigsc0001298:13038..18565 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	518.311	472.354	1619.6	1750.15	1868.59	2240.43	1156.86	857.864	193.414	271.444	1503.92	1328.19	209.315	317.62	339.347	159.217	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028988CEL-III_C
IPR000772Ricin_B_lectin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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