TCONS_00035329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035329
Unique NameTCONS_00035329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035329 ID=TCONS_00035329|Name=TCONS_00035329|organism=Clytia hemisphaerica|type=transcript|length=1813bp
NNAAAAACTACTGTTTAACACCAAGCAATACTGGAGCTGGCACTGGAGAT
TTGACATTTCAACCTTGTGAACTTTACCCATCTGTTCCTGattatcaaaa
attcaaaactggtgGAAGTCGATCCTACACTGACGCCAGTGGAATAAAAC
AGACTGGTTACGAGTACAAGAACGTCAAATCCAACCTTTGTGTCGACGTC
AATGCTTCAGGGGGCCACGGTAATATCGCTATCTATAATTGCCAGAATAG
CGATGACCAATTTTTCTACTTCCGCAACCGAGGGAAAGTAGTCAATTCTG
GACGGTtgagaaatcagaaatcagGACAGTGTGCGACAGCTGATAACACT
GGTTGGAAATCAAACATATACACCACACCATGCACTGATAGCCGAAAGCA
ATACTGGACGCATTACGAGAACGGCGAGGTTTTGAACATGGCATCAAACA
CGTGTATGGATCCAGATGGTACCGGTGAGTCTGCTGAAAGCGTACAAACA
TATGAGTGTGCTGAGCAAACGGATCAAATGTGGTCAACACCATCGCAATA
TGCAGATGGTAACTACCTAGCATTCATGAGCAAGCAGACCAGCAAATGCT
TGGATGTAGAAGGCAATGATGGGACCGGTGACATCGACTTGTATCAATGC
CAAGGTGTTCCAGACCAACGGTTCGAATGGGTTACGGAAGACTGGGTCTC
CCCGACTTCACAATGGCGCCAAATCTCCTGCAATTTAGACGGCGCAGTAA
CATACGAAATCGACAACACCGTCTCCTATACCAACGAAGTTACAAGTCAA
TTTCTGTGGGAGTCGAAATGGCCATAGAATCAAATCtcatctttgaaaaa
atgacaGTTTCCGCCAGCGTGGCTGCATCTGTTGCCTACACGTGGAGCAG
CACGCATGAGCAGACGACCAAAACCTCGTTTTCGTGTGATTATTATGAAA
ACGGAAACCCGTGGAAAGGAGGCTGCATGTGGCAACTGTATGTGACCACC
ACAGACGTGCAGAAGAATGATTTGGCATGGGATGCCAAGATTGTTCGATG
TTCGAGAGGAGGAGATGCACCCAAATGCCCACCTTTCACAAAATGTCAAG
ATGAAGAATGCACAAAATGTGAAGACTACTCCACAGAAGGGAACCGTGTC
GaattgtaaacaaacattttttaaaattttagtaTAGATACTTAAACTAA
ACGTAATTTCTTTTATAAAGTTTAAGGAGTATCTTTGTATTTTCTCTACA
CTAGCGTATCACTTGCTTAAACGGTATTTTTTAATGTAATGTTTTACACA
CTTTGACATAGAGTTCGTATGAAAGCTTGTTTCAAGATTTCGTGACAAGT
CNTTtcacatttttattttcttaaccACCTCATccgaaagttttcttttt
ccaaaGCCAAGAcaagaatttctttttgaacTCAAAAGGTCTGATGAGTC
AATATTTGCTTCTTATAGGATCATTATCTTTCTTACCTAGAAGTAACATT
CAATTTTAGGCATACtatatttcaaccattttcggagtattgtaattttg
taataggttgaaattttgaaataggaAAATTAGAAACTTTGCTTTTGATA
TTGTATTATTTCTTACATTTAACAGCATGTGCACTATTTGATTAAAAGAC
ATTTTTCACAGATGGTTAATATTTCTGTAAAGAAANcccgggggggtact
acccttgtcgaccgacgggggtgctccgctgagattcgaaaaatggaccc
tacgtgggactcgaaatttgcgaaaaaagtgaccctgaatgggactgaaa
ttccaaaattttc
Run BLAST on NCBI

protein sequence of TCONS_00035329-protein

>TCONS_00035329-protein ID=TCONS_00035329-protein|Name=TCONS_00035329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
KNYCLTPSNTGAGTGDLTFQPCELYPSVPDYQKFKTGGSRSYTDASGIKQ
TGYEYKNVKSNLCVDVNASGGHGNIAIYNCQNSDDQFFYFRNRGKVVNSG
RLRNQKSGQCATADNTGWKSNIYTTPCTDSRKQYWTHYENGEVLNMASNT
CMDPDGTGESAESVQTYECAEQTDQMWSTPSQYADGNYLAFMSKQTSKCL
DVEGNDGTGDIDLYQCQGVPDQRFEWVTEDWVSPTSQWRQISCNLDGAVT
YEIDNTVSYTNEVTSQFLWESKWP
Run BLAST on NCBI

transcript from alignment at sc0001298:16218..18320+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035329 ID=TCONS_00035329|Name=TCONS_00035329|organism=Clytia hemisphaerica|type=transcript|length=2103bp|location=Sequence derived from alignment at sc0001298:16218..18320+ (Clytia hemisphaerica)
NNAAAAACTACTGTTTAACACCAAGCAATACTGGAGCTGGCACTGGAGAT
TTGACATTTCAACCTTGTGAACTTTACCCATCTGTTCCTGattatcaaaa
attcaaaactggtgGAAGTCGATCCTACACTGACGCCAGTGGAATAAAAC
AGACTGGTTACGAGTACAAGAACGTCAAATCCAACCTTTGTGTCGACGTC
AATGCTTCAGGGGGCCACGGTAATATCGCTATCTATAATTGCCAGAATAG
CGATGACCAATTTTTCTACTTCCGCAACCGAGGGAAAGTAGTCAATTCTG
GACGGTtgagaaatcagaaatcagGACAGTGTGCGACAGCTGATAACACT
GGTTGGAAATCAAACATATACACCACACCATGCACTGATAGCCGAAAGCA
ATACTGGACGCATTACGAGAACGGCGAGGTTTTGAACATGGCATCAAACA
CGTGTATGGATCCAGATGGTACCGGTGAGTCTGCTGAAAGCGTACAAACA
TATGAGTGTGCTGAGCAAACGGATCAAATGTGGTCAACACCATCGCAATA
TGCAGATGGTAACTACCTAGCATTCATGAGCAAGCAGACCAGCAAATGCT
TGGATGTAGAAGGCAATGATGGGACCGGTGACATCGACTTGTATCAATGC
CAAGGTGTTCCAGACCAACGGTTCGAATGGGTTACGGAAGACTGGGTCTC
CCCGACTTCACAATGGCGCCAAATCTCCTGCAATTTAGACGGCGCAGTAA
CATACGAAATCGACAACACCGTCTCCTATACCAACGAAGTTACAAGTCAA
GTTTCTGTGACAGTCGAAATGGCCATCGAAGCAAATCTCATCTTTGTTGA
CATGAAAGTATCCACCAGCGTGGCTACATCTGTTGCCNCAATGGAGCCAA
ATCTCCTGCAATTTAGACGGCGCAGTAACCTACGAAATCGACAACACCGT
CTCCTATACTAACGAAGTTACAACTCAAGTTTCTGTGGGAGTCGAAATGG
CCATAGAATCAAATCtcatctttgaaaaaatgacaGTTTCCGCCAGCGTG
GCTGCATCTGTTGCCTACACGTGGAGCAGCACGCATGAGCAGACGACCAA
AACCTCGTTTTCGTGTGATTATTATGAAAACGGAAACCCGTGGAAAGGAG
GCTGCATGTGGCAACTGTATGTGACCACCACAGACGTGCAGAAGAATGAT
TTGGCATGGGATGCCAAGATTGTTCGATGTTCGAGAGGAGGAGATGCACC
CAAATGCCCACCTTTCACAAAATGTCAAGATGAAGAATGCACAAAATGTG
AAGACTACTCCACAGAAGGGAACCGTGTCGaattgtaaacaaacatttta
gTATAGTTATACTTAAACTAAACGTAATTTCTTTTATAAAGTTTAAGAAG
TATCTTTGTATTTTCTCTACACTAACGTANAAAACGTGTTGaattgtaaa
caaacattttttaaaattttagtaTAGATACTTAAACTAAACGTAATTTC
TTTTATAAAGTTTAAGGAGTATCTTTGTATTTTCTCTACACTAGCGTATC
ACTTGCTTAAACGGTATTTTTTAATGTAATGTTTTACACACTTTGACATA
GAGTTCGTATGAAAGCTTGTTTCAAGATTTCGTGACAAGTCNTTtcacat
ttttattttcttaaccACCTCATccgaaagttttctttttccaaaGCCAA
GAcaagaatttctttttgaacTCAAAAGGTCTGATGAGTCAATATTTGCT
TCTTATAGGATCATTATCTTTCTTACCTAGAAGTAACATTCAATTTTAGG
CATACtatatttcaaccattttcggagtattgtaattttgtaataggttg
aaattttgaaataggaAAATTAGAAACTTTGCTTTTGATATTGTATTATT
TCTTACATTTAACAGCATGTGCACTATTTGATTAAAAGACATTTTTCACA
GATGGTTAATATTTCTGTAAAGAAANcccgggggggtactacccttgtcg
accgacgggggtgctccgctgagattcgaaaaatggaccctacgtgggac
tcgaaatttgcgaaaaaagtgaccctgaatgggactgaaattccaaaatt
ttc

Coding sequence (CDS) from alignment at sc0001298:16218..18320+

>TCONS_00035329 ID=TCONS_00035329|Name=TCONS_00035329|organism=Clytia hemisphaerica|type=CDS|length=1650bp|location=Sequence derived from alignment at sc0001298:16218..18320+ (Clytia hemisphaerica)
AAAAACTACTGTTTAACACCAAGCAATACTGGAGCTGGCACTGGAGATTT
GACATTTCAACCTTGTGAACTTTACCCATCTGTTCCTGattatcaaaaat
tcaaaactggtgGAAGTCGATCCTACACTGACGCCAGTGGAATAAAACAG
ACTGGTTACGAGTACAAGAACGTCAAATCCAACCTTTGTGTCGACGTCAA
TGCTTCAGGGGGCCACGGTAATATCGCTATCTATAATTGCCAGAATAGCG
ATGACCAATTTTTCTACTTCCGCAACCGAGGGAAAGTAGTCAATTCTGGA
CGGTtgagaaatcagaaatcagGACAGTGTGCGACAGCTGATAACACTGG
TTGGAAATCAAACATATACACCACACCATGCACTGATAGCCGAAAGCAAT
ACTGGACGCATTACGAGAACGGCGAGGTTTTGAACATGGCATCAAACACG
TGTATGGATCCAGATGGTACCGGTGAGTCTGCTGAAAGCGTACAAACATA
TGAGTGTGCTGAGCAAACGGATCAAATGTGGTCAACACCATCGCAATATG
CAGATGGTAACTACCTAGCATTCATGAGCAAGCAGACCAGCAAATGCTTG
GATGTAGAAGGCAATGATGGGACCGGTGACATCGACTTGTATCAATGCCA
AGGTGTTCCAGACCAACGGTTCGAATGGGTTACGGAAGACTGGGTCTCCC
CGACTTCACAATGGCGCCAAATCTCCTGCAATTTAGACGGCGCAGTAACA
TACGAAATCGACAACACCGTCTCCTATACCAACGAAGTTACAAGTCAATT
TCTGTGGGAGTCGAAATGGCCATAGAAAAACTACTGTTTAACACCAAGCA
ATACTGGAGCTGGCACTGGAGATTTGACATTTCAACCTTGTGAACTTTAC
CCATCTGTTCCTGattatcaaaaattcaaaactggtgGAAGTCGATCCTA
CACTGACGCCAGTGGAATAAAACAGACTGGTTACGAGTACAAGAACGTCA
AATCCAACCTTTGTGTCGACGTCAATGCTTCAGGGGGCCACGGTAATATC
GCTATCTATAATTGCCAGAATAGCGATGACCAATTTTTCTACTTCCGCAA
CCGAGGGAAAGTAGTCAATTCTGGACGGTtgagaaatcagaaatcagGAC
AGTGTGCGACAGCTGATAACACTGGTTGGAAATCAAACATATACACCACA
CCATGCACTGATAGCCGAAAGCAATACTGGACGCATTACGAGAACGGCGA
GGTTTTGAACATGGCATCAAACACGTGTATGGATCCAGATGGTACCGGTG
AGTCTGCTGAAAGCGTACAAACATATGAGTGTGCTGAGCAAACGGATCAA
ATGTGGTCAACACCATCGCAATATGCAGATGGTAACTACCTAGCATTCAT
GAGCAAGCAGACCAGCAAATGCTTGGATGTAGAAGGCAATGATGGGACCG
GTGACATCGACTTGTATCAATGCCAAGGTGTTCCAGACCAACGGTTCGAA
TGGGTTACGGAAGACTGGGTCTCCCCGACTTCACAATGGCGCCAAATCTC
CTGCAATTTAGACGGCGCAGTAACATACGAAATCGACAACACCGTCTCCT
ATACCAACGAAGTTACAAGTCAATTTCTGTGGGAGTCGAAATGGCCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020635XLOC_020635Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035329-proteinTCONS_00035329-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035329-exon-sc0001298-1491911889:16218..17017TCONS_00035329-exon-sc0001298-1491911889:16218..17017Clytia hemisphaericaexon
TCONS_00035329-exon-sc0001298-1510915933:16218..17017TCONS_00035329-exon-sc0001298-1510915933:16218..17017Clytia hemisphaericaexon
TCONS_00035329-exon-sc0001298-1575043694:16218..17017TCONS_00035329-exon-sc0001298-1575043694:16218..17017Clytia hemisphaericaexon
TCONS_00035329-exon-sc0001298-1491911889:17197..17561TCONS_00035329-exon-sc0001298-1491911889:17197..17561Clytia hemisphaericaexon
TCONS_00035329-exon-sc0001298-1510915933:17197..17561TCONS_00035329-exon-sc0001298-1510915933:17197..17561Clytia hemisphaericaexon
TCONS_00035329-exon-sc0001298-1575043694:17197..17561TCONS_00035329-exon-sc0001298-1575043694:17197..17561Clytia hemisphaericaexon
TCONS_00035329-exon-sc0001298-1491911889:17673..18320TCONS_00035329-exon-sc0001298-1491911889:17673..18320Clytia hemisphaericaexon
TCONS_00035329-exon-sc0001298-1510915933:17673..18320TCONS_00035329-exon-sc0001298-1510915933:17673..18320Clytia hemisphaericaexon
TCONS_00035329-exon-sc0001298-1575043694:17673..18320TCONS_00035329-exon-sc0001298-1575043694:17673..18320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001298supercontigsc0001298:16218..18320 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.197749	0.119972	0.314097	321.391	226.872	867.402	740.39	68.6989	73.1864	11.5659	20.892	4.20907	11.3487	98.2452	79.989	39.1776	36.6181	45.286	17.9218	0.0911561	0.0438648	0.240722	0	0.147914	0.00636808	0.110436	0.129389	0.148311	0.0964548
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
IPR028988CEL-III_C
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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