TCONS_00035321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035321
Unique NameTCONS_00035321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035321 ID=TCONS_00035321|Name=TCONS_00035321|organism=Clytia hemisphaerica|type=transcript|length=712bp
GTAGATTTTATATTACTTCCAATTGTTATTCAATATTTGGTTATGTTGAA
GACGACACCTTGCAGCTTACTGAAAGTTAGGTTAGATAAAGAGGAGGGAT
AATATATTAAACATTGGGTATAGAGCCTAAAAATAAGAACAATAAGAACA
ATATGTCAAAAATGAAATCAGCCAAGCAGCAGCAAAAATTTACTGGTTTT
TATAAACAAAAAGATGCGTGTTTTCATTAAAATTATCTCCTTGTTTCAGA
AAAACGAAACAAAAAAAAATTCAAATAAATAGTAGATGCAACACTAATAA
AACCCGAAACAAAAAATAAAATTACTAAATATAAAGATATGGTATGGACA
ATAGACAATGGTGGACCCATGTTGGCAATGTTATGGCTCATGATACACTT
GCAAGTTGAAAAAGGAGGTATGTATACACGGTCATATTTTTTAAAGATAC
TACTTCTCGTTGGGATGAAAATTTCTACGGAAATCCTAACGGAGAAATTC
TATTGTCTTCAGCTCAAAATTTCCATTTGGGATGGTTTTGGAATGAATTT
TTCCCTTTTAATTTGAAGTAGGGACAAAATCAAAGGCAATTTCCCCATTG
TTGGTTGTTTTCCAACCAAGACGAGATTGTAGACCATTTTTCAAATTCTG
ACAGTTTTCAATTTGTGAATACAATTATTTACTTTATATATAAGGATTCG
CCTATGGAACAG
Run BLAST on NCBI

transcript from alignment at sc0001297:5940..6651-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035321 ID=TCONS_00035321|Name=TCONS_00035321|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at sc0001297:5940..6651- (Clytia hemisphaerica)
GTAGATTTTATATTACTTCCAATTGTTATTCAATATTTGGTTATGTTGAA
GACGACACCTTGCAGCTTACTGAAAGTTAGGTTAGATAAAGAGGAGGGAT
AATATATTAAACATTGGGTATAGAGCCTAAAAATAAGAACAATAAGAACA
ATATGTCAAAAATGAAATCAGCCAAGCAGCAGCAAAAATTTACTGGTTTT
TATAAACAAAAAGATGCGTGTTTTCATTAAAATTATCTCCTTGTTTCAGA
AAAACGAAACAAAAAAAAATTCAAATAAATAGTAGATGCAACACTAATAA
AACCCGAAACAAAAAATAAAATTACTAAATATAAAGATATGGTATGGACA
ATAGACAATGGTGGACCCATGTTGGCAATGTTATGGCTCATGATACACTT
GCAAGTTGAAAAAGGAGGTATGTATACACGGTCATATTTTTTAAAGATAC
TACTTCTCGTTGGGATGAAAATTTCTACGGAAATCCTAACGGAGAAATTC
TATTGTCTTCAGCTCAAAATTTCCATTTGGGATGGTTTTGGAATGAATTT
TTCCCTTTTAATTTGAAGTAGGGACAAAATCAAAGGCAATTTCCCCATTG
TTGGTTGTTTTCCAACCAAGACGAGATTGTAGACCATTTTTCAAATTCTG
ACAGTTTTCAATTTGTGAATACAATTATTTACTTTATATATAAGGATTCG
CCTATGGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020627XLOC_020627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035321-exon-sc0001297-1575043694:5940..6651TCONS_00035321-exon-sc0001297-1575043694:5940..6651Clytia hemisphaericaexon
TCONS_00035321-exon-sc0001297-1510915933:5940..6651TCONS_00035321-exon-sc0001297-1510915933:5940..6651Clytia hemisphaericaexon
TCONS_00035321-exon-sc0001297-1491911889:5940..6651TCONS_00035321-exon-sc0001297-1491911889:5940..6651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001297supercontigsc0001297:5940..6651 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0951167	0.0751625	0.362722	0.524088	0.0737523	0	0.559092	0.220898	0.946691	1.00056	0.146868	0.62448	0.128256	0.127409	1.3969	0.958484	0	0	0.103577	0.393081	0.0757274	0.4116	0	0.475232	10.8287	8.67105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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