TCONS_00035314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035314
Unique NameTCONS_00035314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035314 ID=TCONS_00035314|Name=TCONS_00035314|organism=Clytia hemisphaerica|type=transcript|length=648bp
agaaaaagaaaatcaaactttATCTCATCGATTTGAGATGTTCAAATTAA
AGAATTCTCGTGATTCTCAATCAAGCCAAGTTCAAGCCGATCAACAACTC
CAAAATAAGTTAACAATTAGTAGCCAAGGAGCACGAAATGGTTttgtaca
agaaaaaacaagaaaatgaatggaaaatgaaaatgaaagatttggaaaat
gaacacaaaattaaaatcttacaAACGGAGACAAAATTGAACGAGATGGA
GAAAGAAATGACAGAGAAAGAAGCAACTGTCCAACATTTGAAcagagaaa
ttgaaaatttgaaaagcgTCATTCAAAAGCAAAACAAAGCTGCGAATGAA
GTTGTGGAAAATATGACGACGATCGATCGTTTGGTTTGGGGAGCAGAATA
TAAATTCACGAAGGAAATAAATCTTCACTTTTGTACCCTTCTTATGGTAA
CTGGTACAAAGCGATTTCTGCGATAATgaggaaataaaaaaatgttcaag
aagGATAAATATTTGTTCATGAGAAAGGAATTCAATAAGGGCCATGTATT
TCTGGATTTCGTGAACAGAAAAGAcaacttttgcgaagaagagttgATGG
ATTTTCTGGTTGAAGATTTGAAAATTGTATGGGCAACTGCAACTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00035314-protein

>TCONS_00035314-protein ID=TCONS_00035314-protein|Name=TCONS_00035314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MVLYKKKQENEWKMKMKDLENEHKIKILQTETKLNEMEKEMTEKEATVQH
LNREIENLKSVIQKQNKAANEVVENMTTIDRLVWGAEYKFTKEINLHFCT
LLMVTGTKRFLR
Run BLAST on NCBI

transcript from alignment at sc0001294:44652..45299

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035314 ID=TCONS_00035314|Name=TCONS_00035314|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at sc0001294:44652..45299 (Clytia hemisphaerica)
AGAAAGTTGCAGTTGCCCATACAATTTTCAAATCTTCAACCAGAAAATCC
ATcaactcttcttcgcaaaagttgTCTTTTCTGTTCACGAAATCCAGAAA
TACATGGCCCTTATTGAATTCCTTTCTCATGAACAAATATTTATCcttct
tgaacatttttttatttcctcATTATCGCAGAAATCGCTTTGTACCAGTT
ACCATAAGAAGGGTACAAAAGTGAAGATTTATTTCCTTCGTGAATTTATA
TTCTGCTCCCCAAACCAAACGATCGATCGTCGTCATATTTTCCACAACTT
CATTCGCAGCTTTGTTTTGCTTTTGAATGAcgcttttcaaattttcaatt
tctctgTTCAAATGTTGGACAGTTGCTTCTTTCTCTGTCATTTCTTTCTC
CATCTCGTTCAATTTTGTCTCCGTTtgtaagattttaattttgtgttcat
tttccaaatctttcattttcattttccattcattttcttgttttttcttg
tacaaAACCATTTCGTGCTCCTTGGCTACTAATTGTTAACTTATTTTGGA
GTTGTTGATCGGCTTGAACTTGGCTTGATTGAGAATCACGAGAATTCTTT
AATTTGAACATCTCAAATCGATGAGATaaagtttgattttctttttct

Coding sequence (CDS) from alignment at sc0001294:44652..45299

>TCONS_00035314 ID=TCONS_00035314|Name=TCONS_00035314|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0001294:44652..45299 (Clytia hemisphaerica)
TTATCGCAGAAATCGCTTTGTACCAGTTACCATAAGAAGGGTACAAAAGT
GAAGATTTATTTCCTTCGTGAATTTATATTCTGCTCCCCAAACCAAACGA
TCGATCGTCGTCATATTTTCCACAACTTCATTCGCAGCTTTGTTTTGCTT
TTGAATGAcgcttttcaaattttcaatttctctgTTCAAATGTTGGACAG
TTGCTTCTTTCTCTGTCATTTCTTTCTCCATCTCGTTCAATTTTGTCTCC
GTTtgtaagattttaattttgtgttcattttccaaatctttcattttcat
tttccattcattttcttgttttttcttgtacaaAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020622XLOC_020622Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035314-proteinTCONS_00035314-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035314-exon-sc0001294-1491911889:44652..45299TCONS_00035314-exon-sc0001294-1491911889:44652..45299Clytia hemisphaericaexon
TCONS_00035314-exon-sc0001294-1510915933:44652..45299TCONS_00035314-exon-sc0001294-1510915933:44652..45299Clytia hemisphaericaexon
TCONS_00035314-exon-sc0001294-1575043694:44652..45299TCONS_00035314-exon-sc0001294-1575043694:44652..45299Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001294supercontigsc0001294:44652..45299 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14307	0.116857	0	0	0.273837	0.233303	0.77918	1.01619	0.171141	0	0.388294	0.17917	0.487135	0.188308	0.927789	1.31253	0.255908	0.895143	1.20545	0.963255	0.37439	0.435798	1.0318	0.128073	0.096464	0.124603	0.4842	0	0	0.676418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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