TCONS_00035313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035313
Unique NameTCONS_00035313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035313 ID=TCONS_00035313|Name=TCONS_00035313|organism=Clytia hemisphaerica|type=transcript|length=374bp
CTCAAATGTTAAACTCATAGTACAATCTACAAAACTGTATGAAGGAGAAC
CTTCCAAATCATCAGTACCGAAGTTGTCCACTCAAATGTTAAACTCATGG
TACAATCTACAAAACTGTATGAAGGAGAACCTTCCAAATCATCAGTACCG
AAGTTGTCcacttaaattttaaaaacatggcATAATCTAAAAAACTGTAT
GAAGGAGAACCTTCCAAATCATCAGTACCGAAGTTGTCAACTCAAATGTT
AAACTCATGGTATAATTTCCAAAACTGTATGAAGGAGAACCTTCCAAATC
ATCAGTACCGAAGTTGTCCACTCAAAAGTTAAACTCATGGTATAATTTCC
AAAACTGTATGAAGGAGAACCTTC
Run BLAST on NCBI

transcript from alignment at sc0001294:23709..24082

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035313 ID=TCONS_00035313|Name=TCONS_00035313|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at sc0001294:23709..24082 (Clytia hemisphaerica)
GAAGGTTCTCCTTCATACAGTTTTGGAAATTATACCATGAGTTTAACTTT
TGAGTGGACAACTTCGGTACTGATGATTTGGAAGGTTCTCCTTCATACAG
TTTTGGAAATTATACCATGAGTTTAACATTTGAGTTGACAACTTCGGTAC
TGATGATTTGGAAGGTTCTCCTTCATACAGTTTTTTAGATTATgccatgt
ttttaaaatttaagtgGACAACTTCGGTACTGATGATTTGGAAGGTTCTC
CTTCATACAGTTTTGTAGATTGTACCATGAGTTTAACATTTGAGTGGACA
ACTTCGGTACTGATGATTTGGAAGGTTCTCCTTCATACAGTTTTGTAGAT
TGTACTATGAGTTTAACATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020621XLOC_020621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035313-exon-sc0001294-1491911889:23709..24082TCONS_00035313-exon-sc0001294-1491911889:23709..24082Clytia hemisphaericaexon
TCONS_00035313-exon-sc0001294-1510915933:23709..24082TCONS_00035313-exon-sc0001294-1510915933:23709..24082Clytia hemisphaericaexon
TCONS_00035313-exon-sc0001294-1575043694:23709..24082TCONS_00035313-exon-sc0001294-1575043694:23709..24082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001294supercontigsc0001294:23709..24082 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37352	2.12155	0.329866	1.16569	0.289962	0.458264	0.552876	0	0.755788	0.65371	1.86983	0.214473	3.39084e-05	0	0.0840041	0.66092	1.16283	1.17407	0.383092	1.25378	1.06579	0.912614	2.12193	1.31252	0	0	7.12096e-05	0.00012433	0.853458	1.15974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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