TCONS_00035308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035308
Unique NameTCONS_00035308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035308 ID=TCONS_00035308|Name=TCONS_00035308|organism=Clytia hemisphaerica|type=transcript|length=423bp
ACGCTTTGGAAATCAGAGAAAAACATTGCGATTTTTGACTTGAGTGTGGG
GAATCAAAGTTTATAAATTTTTGATGCCATAACATCCAACATGCCATGCG
AAGAAAACAGTTGATGTATTAAGGAACATTTAAACAAACAgGATTATTCG
AACGAGCAAAGGAGACAGCCGTAAAGATTTCACTGTAATTTTACATTTGC
TGAATAAAGACTTATGGGACATCACTTTTTGTGCAAAGCAGCAAAGTTGT
ATTCAAATGACCGTTGAATATGAAAGCTTTAGATTGGAGGAAATCAACAG
TATTGGATAAATCACTAATGATTACGACTGAAAGGACATTGCGGAGAGGA
CAACAAAcaagtgaaaataatttttgtagaaataaatttgatctaaaatc
tttaattttcctGTCTGAGTTAG
Run BLAST on NCBI

transcript from alignment at sc0001294:30601..32050+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035308 ID=TCONS_00035308|Name=TCONS_00035308|organism=Clytia hemisphaerica|type=transcript|length=1450bp|location=Sequence derived from alignment at sc0001294:30601..32050+ (Clytia hemisphaerica)
ACGCTTTGGAAATCAGAGAAAAACATTGCGATTTTTGACTTGAGTGTGGG
GAATCAAAGTTTATAAATTTTTGATGCCATAACATCCAACATGCCATGCG
AAGAAAACAGTTGATGTATTAAGGAACATTTAAACAAACAGTAAGTGAAA
CTTTTATAGTAATctttaaaaagtcttgaaaaatttGCATTCCTTTCTAG
CTAAAATTAAGTCAATCTTTAAGTCACAACAGACAGGGATTTAAAAATTC
GCTCTTAGAGCATTTCACAGAATATTATTACAGTTTGGAGCGTTGTTTTT
TAGTTTGGTATATTCATTTATGCCAACAATTTCATGCTGATTTCTTAgac
atttctgaaatctgaggccaagtttgttttttaattatttctaaGGTTTT
GGCTCAAATCAAACCTCACGCTCTAATAAAACTGCTCGGTTGAAGaggtt
ttatttcaaattttaatatatcCTTTTTTATCTTTGGATAAGTTGAATTT
CTATGTTACTTGAATGTGCTGAAAATAGAAGGTATATTGATTAGGTGAGC
TTTCAACTTGTAttcatatttcttttctttaggGATTATTCGAACGAGCA
AAGGAGACAGCCGTAAAGATTTCACTGTAATTTTACATTTGCTGAATAAA
GACTTATGGGACATCACTTTTTGTGCAAAGCAGCAAAGTTGTATTCAAAT
GACCGTTGAATATGAAAGGTACGCACTATGATTTTATTATTCATATTTCA
CCTTTATTACATTTGCTGCATAAGGGACCCGTGTAGGACATTGCTAACCA
TTCAAATTTGCAAataacacacccctgtctcacagccccgttaGAACTTC
TTTCCTCAGTGGGAATATAATTTCCTGTCGAAATTCaagtgggaataaaa
attattttgtttcaagtttaaaacaagttttccaaggttaaaaactcCAT
TCggggtggttttggagtgcagtttttaaacattgattttcggatgggga
tgaaatcatagtcaatttctcagtggggctgaaattcccggTAATTTTTC
TACCGGGGATGAAACTTTTGCCAGAtattccagtggggctgggatTCCAG
CGGATCTGTGACAAAAGGGTTTAATAATTAATGAATATAATTAAACcttg
taaattttgaattttttctaatAATATTGCTAGTAATCTTTGTTGTGATA
GGATTGCACAACATAAAGCACTTTCTGTAAaagcaattttaaagtgctaa
ctttgaaaaatttcaataaatattttttaacattttttttgtcTAAATCA
TAGCTTTAGATTGGAGGAAATCAACAGTATTGGATAAATCACTAATGATT
ACGACTGAAAGGACATTGCGGAGAGGACAACAAAcaagtgaaaataattt
ttgtagaaataaatttgatctaaaatctttaattttcctGTCTGAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020616XLOC_020616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035308-exon-sc0001294-1491911889:30601..30740TCONS_00035308-exon-sc0001294-1491911889:30601..30740Clytia hemisphaericaexon
TCONS_00035308-exon-sc0001294-1510915933:30601..30740TCONS_00035308-exon-sc0001294-1510915933:30601..30740Clytia hemisphaericaexon
TCONS_00035308-exon-sc0001294-1575043694:30601..30740TCONS_00035308-exon-sc0001294-1575043694:30601..30740Clytia hemisphaericaexon
TCONS_00035308-exon-sc0001294-1491911889:31183..31318TCONS_00035308-exon-sc0001294-1491911889:31183..31318Clytia hemisphaericaexon
TCONS_00035308-exon-sc0001294-1510915933:31183..31318TCONS_00035308-exon-sc0001294-1510915933:31183..31318Clytia hemisphaericaexon
TCONS_00035308-exon-sc0001294-1575043694:31183..31318TCONS_00035308-exon-sc0001294-1575043694:31183..31318Clytia hemisphaericaexon
TCONS_00035308-exon-sc0001294-1491911889:31904..32050TCONS_00035308-exon-sc0001294-1491911889:31904..32050Clytia hemisphaericaexon
TCONS_00035308-exon-sc0001294-1510915933:31904..32050TCONS_00035308-exon-sc0001294-1510915933:31904..32050Clytia hemisphaericaexon
TCONS_00035308-exon-sc0001294-1575043694:31904..32050TCONS_00035308-exon-sc0001294-1575043694:31904..32050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001294supercontigsc0001294:30601..32050 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.2696	8.99343	7.39579	5.38454	1.18494	0.813222	0.852565	0.399081	4.09928	4.1134	1.95541	2.3854	0.110258	0	0.0941375	0	0.124453	0.255121	0	0.184414	0.641157	0.816283	10.2267	9.40883	0	0	0.227323	0	3.58075	3.30065
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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