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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035303 ID=TCONS_00035303|Name=TCONS_00035303|organism=Clytia hemisphaerica|type=transcript|length=581bp
ctATAGTTGCAGTAAACAGTCAAAAAGTGTGCAAAGATCAATCTCCAACC
AGCAATTGTCTCTCATGGAAATCAAACGGTTTCTGCAAAGAAGACTACTC
AAAACTCTACTGTGAAAAGACATGTCGCTTCTGTAAAGGCTCGTCCACAC
CTGCCCCGCCAACTACCGTTTCAACCCAAGGGCCACCCCTCCCGTCTTCA
AGTCCATCAGAATGTAGGTGATCCACTGTTCCACAAAGTCGCATCGTGAA
TGGCGAAGATGCGAAGCCAGGAGCATGGCCGTGGATTGCGTCGCTTCAAA
CCACCAGTGGATGGCATTTTTGTGGTGGAACTCTAATCACTCCAAACTGG
GTATTAACAGCCAGTCATTAAACTGAAGGCCAATCACCAGACAGGATTAC
CGTCAACCTTGGCGTTCACAACAGAAACATTGACGAAGCCTCTAAACAAC
GAATCCAAGTCAAACAAATCATCATGCATCCAAGATACAGCAGATATAAC
CTGAATGCAGATATCGCTCTTTTGGAATTGAAAACACCTGCTCAATTGAA
CAGTCGCGTACGTCTTGCGTGCGTACCTAAA Run BLAST on NCBI transcript from alignment at sc0001288:66592..69620- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035303 ID=TCONS_00035303|Name=TCONS_00035303|organism=Clytia hemisphaerica|type=transcript|length=3029bp|location=Sequence derived from alignment at sc0001288:66592..69620- (Clytia hemisphaerica)
CTATAGTTGCAGTAAACAGTCAAAAAGTGTGCAAAGATCAATCTCCAACC
AGCAATTGTCTCTCATGGAAATCAAACGGTTTCTGCAAAGAAGACTACTC
AAAACTCTACTGTGAAAAGACATGTCGCTTCTGTAAAGGCTCGTCCACAC
CTGCCCCGCCAACTACCGTTTCAACCCAAGGGCCACCCCTCCCGTCTTCA
AGTCCATCAGAATGTAGGTGATCCACTGTTCCACAAAGTCGCATCGTGAA
TGGCGAAGATGCGAAGCCAGGAGCATGGCCGTGGATTGCGTCGCTTCAAA
CCACCAGTGGATGGCATTTTTGTGGTGGAACTCTAATCACTCCAAACTGG
GTAAAGCAATTATACATCCTGGCCTAAAATAAAAATATCCTAAAAAATTA
TAATGCTGAATGTTCTATCAAAATCCCGATCGAGATAGAAAATCGTTTGT
TCCTTGGCTGAGAAAATAGTTGGGATAGATAAGGAGTGAATTTTTTTTTT
GATTTTCAAACGGGAATGAAACAAGGGAAAATATTCCCATTGAGAGTAAA
ATTGAAGAGTCTTTTCTCAACGGGGACAAAATTTTGGCCACAATTTCCAG
TAAGGCTAGGGTCTGTGACACAGGTATGTTTTATCAGTGTGAATTTGTGG
AGGTTAACAGAAAAATGATATGTCCTTTATACACATCGATTTTGGGCTAT
CTCTTTAATTTAATCGGATATTTCAATTTGGGAGGGTTTGGCAGACTTCC
AAGCTATATTGAGTCTTATTGAACTATTTTTGAGCTTTTGGATCCTCAGA
TTCTAAGGTCCTAAGTCTTAAGTCTCATGTTAAAACTCAGAGTTAAAACT
CTGATGGATTTCGCTTTTTTCTCAAATATTAAAATATCATGACCTTGGTT
GTCTTTGAAAATTAAAAATGCCGATTTCTGCTCTGCAGGGGGTCTTAAAT
TAGGAGAAAACCCCAAAGATTTGAAAAATAACCCTTTTCCGACCATTTTG
AGGCATTTTCATTATTAGGTCAAAATCAGTTTTTTGTGAAATATTTCACT
TTTTGAGAAGCTCTCGTTTACGGAAACCCAAAAATGCCAATATTTGAGAA
AACTTTCAATTTTTAAAAGTTTTTGTCTCTTAAATCGAAGAAAGGGATAT
TTTTAACCGGAAAATATGCCTTAAGTTTGAAATTAGACCCCCAGCAGAGC
AGAATTTGGCATTTTTGATTTTCAAAGACAATTAAGGTTGAAATATATCG
AGAATTTTGGTTATTTTAACGTTTTTTAAGATTTAAAGTTCCGGTGAAAA
AGTCGATCTCTTTAATTTAATCGAATATTTCAATTTTGGAGTTGTTGGCA
GACTTCCAGGCTATATTCGGAGTCTTATTGGACTATTTTTGAACTTTTGG
ATCCTCAGATCCTAGGGTCCTAAGTCTTAAGTCTCATGTTAAAACTCTAC
CCTTCCAACTTACTTTAGAGCACTTACATTGATTGTGCTTTAAAAACTTC
CCGATGGGTTTTCCTTTTTTCATTATGATCATGATTGTAGATTATGGTAC
ATCATATTTAGGATTTTACCTACCTTCTCAATATGATTCGTTAACTTTAT
TTTTATGTCAAAACTTACGAAGATCTGGCAGATGATGCCAGATTTCATTC
TACCGGGTGTTTCAGAAAAAGTGCATGATTATGAAGTTAATCTTCGAAAA
AACTTAAGATTTTATAAATCCAAACTTTTAAGAATTCGAAGGACGAAAGA
CTAACTTGAATTTTGAGCTATCATACTTTAAATTTGTTTCACGTATTCAA
AAGTGATTAAAGAAAGTCCGAAAAAATTCTCTTTCGAAGTAGCCTCATTT
TTGAGAAAAAGTGTAGATAAATTTTATTTAATGTCCATTAGGTATTGACG
CTAGCTAGTAAAGTTCAGTGACTTTCTTCATAACTTTTGAACACATGAAG
TAAATTTAAAGTATGATAGCTCAAAACTTAAGTTAGCTTTTCTTCTTTCT
GATGATGAAAAGTTAAGATATATAATATTTTAGGATTTTTATTTAATAAT
TCTTGACGGCGACTTTCAATATATCAATGGAACGTATCGAATAGTAAAAC
GTTGTATGAGTGACGGTAGAAAGTCTTTCACCATATTTAATAATAATAAT
GCTATACAATGCACAGGCCACCGTGCGAGCACATGGGCCTCTATGAACCA
CTCTTTGTTCGGTTTACAATTTCTTTAAGATAGAGCTTTTTCCTAGGGCT
CCCCCTGACTTTGAATTTAAAGTTTGCATCCTTTAGTGACGTGTTCATTA
CTTGGGCTTTCATACACCACTCTTTGATTGTCTTCCTTTCACTTTTCGTA
AGATCTTCTGTCACACGGAAGGGCAATCTTTCTCCTTTAGTAATTGCTCT
TAACACTGTATTTTTGTCTTCTTCGTTTGCAAATCGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTTCCGATTCTTTGAGTTTCTTCAA
TCTTTATATTCCTTAAGCTTAGTTTCTTAGGTAAGACTTTTTCATTTAGA
TATTCTTCGTCGTAGATTTTGGTTTTACCTAGCACCCTGCCTGGAATATG
CATATATCATTCTCTCCCAATCCGGCTGCTAATCGAAGTATCGATTGACG
TCGAATGAGCTTAGTAAGGCTCAAATTGTAGATGTAGAACCACTGACCTT
TATGTGTGTAGAACGATAAACTCTGTATACACGTTGAATTAGAGAACGTC
AACTGTAATACGGATCAAGGTTGATATTTGATTGATGATTACTTTTAGGT
ATTAACAGCCAGTCATTAAACTGAAGGCCAATCACCAGACAGGATTACCG
TCAACCTTGGCGTTCACAACAGAAACATTGACGAAGCCTCTAAACAACGA
ATCCAAGTCAAACAAATCATCATGCATCCAAGATACAGCAGATATAACCT
GAATGCAGATATCGCTCTTTTGGAATTGAAAACACCTGCTCAATTGAACA
GTCGCGTACGTCTTGCGTGCGTACCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035303-exon-sc0001288-1575043694:69271..69620 | TCONS_00035303-exon-sc0001288-1575043694:69271..69620 | Clytia hemisphaerica | exon |
| TCONS_00035303-exon-sc0001288-1575043694:66592..66822 | TCONS_00035303-exon-sc0001288-1575043694:66592..66822 | Clytia hemisphaerica | exon |
| TCONS_00035303-exon-sc0001288-1510915933:69271..69620 | TCONS_00035303-exon-sc0001288-1510915933:69271..69620 | Clytia hemisphaerica | exon |
| TCONS_00035303-exon-sc0001288-1510915933:66592..66822 | TCONS_00035303-exon-sc0001288-1510915933:66592..66822 | Clytia hemisphaerica | exon |
| TCONS_00035303-exon-sc0001288-1491911889:69271..69620 | TCONS_00035303-exon-sc0001288-1491911889:69271..69620 | Clytia hemisphaerica | exon |
| TCONS_00035303-exon-sc0001288-1491911889:66592..66822 | TCONS_00035303-exon-sc0001288-1491911889:66592..66822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001288 | supercontig | sc0001288:66592..69620 - |
Blast
BLAST of TCONS_00035303 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 3.476e-27 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 3
Query: 237 SRIVNGEDAKPGAWPWIASLQTTSGWHFCGGTLITPNWVLTASH*TEGQSPDRITVNLGVHNRNIDEASKQRIQVKQIIMHPRYSRYNLNADIALLELKTPAQLNSRVRLACVP 578
SRIVNGEDA PG+WPW SLQ +G+HFCGG+LI+ +WV+TA+H G + V G ++ DE + Q +++ ++ +P++S +N DI LL+L TPA+ + V C+P
Sbjct: 32 SRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAH--CGVRTSDVVVA-GEFDQGSDEENIQVLKIAKVFKNPKFSILTVNNDITLLKLATPARFSQTVSAVCLP 142
The following BLAST results are available for this feature:
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