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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035301 ID=TCONS_00035301|Name=TCONS_00035301|organism=Clytia hemisphaerica|type=transcript|length=273bp
ACCTGCTGAAATGAACGAATATTCTTGGAGACTTTGGATTGAATTCCAAC
CATacataaatcaaattttgaggAGACAAATCTTACAGACTGTCCACAGC
GAAACTGAGAGCCGTTTACGAAAGTACTCCAAGCGGCTAGTTCGACATGT
CAACCTTCAAAATTTGGTTTTGAAACTCTTTTTTGCCAAACATCCAATTT
TAAGGTGGAAAAATCATTATCGATAATAACCTCAGGTATCACTTTAGTGA
ATGAGTGATTACAATGTGCGAAG Run BLAST on NCBI transcript from alignment at sc0001288:16282..18111+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035301 ID=TCONS_00035301|Name=TCONS_00035301|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at sc0001288:16282..18111+ (Clytia hemisphaerica)
ACCTGCTGAAATGAACGAATATTCTTGGAGACTTTGGATTGAATTCCAAC
CATacataaatcaaattttgaggAGACAAATCTTACAGACTGTCCACAGC
GAAACTGAGTATGTATTTGTATTCCACTACcttaattggattaattttag
tcgggattaaagttaaaaaataactATAGTACATTGCTATTGGCGTATTG
GGATGAATTCTTACACTTTTATGTAAAATATCATGAAAAGTGTGTAACGA
AAATAGGGTTGTTattcagaagcagccaccgacctaaaatttgcaaatat
ctgttctgatttgccagctcgaaggatttccacgaaattaagaacaggtC
CTCGTAAtccaggggagaaatttttacttcagaacagttatatttttcca
ggtaggaggtaaaaaaaactttcggaACACGTACAAAATTACCAGGCGAT
ATATTttacgcgagttaactgttcttatctaccagggctgacaaaatctt
ataagaacagatcgctaaattccagctcgacATTGAAgtacttttaagaa
cagaaacttaatttccagctaacagttcgaACAGATTGACAATTgccaga
tgttttgtagaacagatAGAGAATTTTCAGCTaccactccaggcaaccac
attcagaaggaaaagaacagatgtcaaagactttttgactttcttgaaat
tccctcagaacagataggaaattaTTTCCTATCTGTTtagacaccttatt
ttttggttatcaaactattttttataagaacagatcatatttttccagct
ggtcccaatcttcagtagaacagaccatatttttccagctgctggtccca
atcttcagtagaacagatcacttttttccagcagacttttttctttagtt
cgttaAGAACAGATCGCCATATCCAGgttggaacgtgccttcagaacaga
tattttgtcCCCCTTCGGTGGATGATTTCGGTCTTTGAAGTGTCTGAAGG
CCGATCAGACCCCCTAACGTGGCCCAAAATCCGTCACATTTCTTGTTGCC
ACTACATACCATCAGCAGCCAATTAACATTTGCATTTTCAAACCAGGctc
aaaaagagagaaaagacCCCAAAGTTTTTGTGCTTGCTTCGCTCGCCtta
cttttaaaaatatatttgattcccatagggggcgccaaaatctaAATCTT
CTAACAATGgcctccccagtttgcccgaattttagtcgacccaccacACT
ACTGCTTGGCCCTAAAATATAGGAAgattattgaaaataattaatcTCAA
AACCAAAATNACTACTGCTTGGCCCTAAAATATAGGAAgattattgaaaa
taattaatttcaaaaccaaaatatCACTAAATTTAGCAATCGAATTCCAT
AAAGTTAGTTCATTTCAAGGCTCATCAATTGAGCCTGGTTTGAAATACAA
CTCGTATACTTGGCATCTGATGACATCAACAAGAATTGAGCCAGATTTGG
GGCTATTGTTGACTTGATCTGAGCGGGAGTGTAAATTTTGTTTCCACCGA
GGATAcatcaaaacttttcaatttgaTTGTGTATTTCATAAACTGCAGct
acatattatttttttcaaagttaaagaattttttgcatTAATTATCTACG
GTTCTTTTATTACAGGAGCCGTTTACGAAAGTACTCCAAGCGGCTAGTTC
GACATGTCAACCTTCAAAATTTGGTTTTGAAACTCTTTTTTGCCAAACAT
CCAATTTTAAGGTGGAAAAATCATTATCGATAATAACCTCAGGTATCACT
TTAGTGAATGAGTGATTACAATGTGCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035301-exon-sc0001288-1491911889:16282..16389 | TCONS_00035301-exon-sc0001288-1491911889:16282..16389 | Clytia hemisphaerica | exon |
| TCONS_00035301-exon-sc0001288-1510915933:16282..16389 | TCONS_00035301-exon-sc0001288-1510915933:16282..16389 | Clytia hemisphaerica | exon |
| TCONS_00035301-exon-sc0001288-1575043694:16282..16389 | TCONS_00035301-exon-sc0001288-1575043694:16282..16389 | Clytia hemisphaerica | exon |
| TCONS_00035301-exon-sc0001288-1491911889:17947..18111 | TCONS_00035301-exon-sc0001288-1491911889:17947..18111 | Clytia hemisphaerica | exon |
| TCONS_00035301-exon-sc0001288-1510915933:17947..18111 | TCONS_00035301-exon-sc0001288-1510915933:17947..18111 | Clytia hemisphaerica | exon |
| TCONS_00035301-exon-sc0001288-1575043694:17947..18111 | TCONS_00035301-exon-sc0001288-1575043694:17947..18111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001288 | supercontig | sc0001288:16282..18111 + |
Blast
The following BLAST results are available for this feature:
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