|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035300 ID=TCONS_00035300|Name=TCONS_00035300|organism=Clytia hemisphaerica|type=transcript|length=798bp
CTCCAACgaccaaaatttttattaaaagaacaATTCTTGGAAAAGGTGTT
ATTTGTTTAATAGAGACTTGTTACAAAGATTTGATTATGTAAGCCCAATT
TCAACTTGAtgctttttgttttggtttcttgCAGAAGCTTTACGCCAAGT
TAAAACACGTCACCGAGCTCACAGTCTTTAACACCCATCCTGGGATTTCG
CAAATATTACAATGCAACTGCAAGCATGATCGGGCAACGCGATAATCTAC
TAacggtgaaaattgctcaatcTCAACTCCTCCCAAATTTCACTGTCATC
ATCGAGCCACTCAAAAGAGTCGGCAGAACAAGTTCATCAAGTTTGAATTG
ACTCTTACCGGACAGTGAGATATTCATGCGCACTTGGCGAAGAATAAAAC
ATCTTGTGTCAACATTGGTGAAGAGTTCATACAGAAATGGAAATGCTAAT
CGACGGATGAAAACAATAGGCTAAGCAACTAGNGGCATTGCGCTGGAATT
GACATCTGTTCATCAAGTTTGAATTGACTCTTACCGGACAGTGAGATATT
CATGCGCACTTGGCGTAGAATAAAACATCTTGTGTCAACATTGGTGAAGA
GTTCAAACAGAAATGGAAATGCTAATCGACGGATGAAAACAATAGGCTAA
GCAACTAGAGAAGAGAAAATAGCCACTTCATCACCATATTCGCTATTCTC
AAGAACTAAAAAGTGACATGCCGAACATTAGTGGTTTGGTTCATCAATGG
ATGGCATCCTTCATCCTTGATCTTTCTTAGCAGGAAGTTGAAGAGTAC Run BLAST on NCBI transcript from alignment at sc0001288:10511..13353+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035300 ID=TCONS_00035300|Name=TCONS_00035300|organism=Clytia hemisphaerica|type=transcript|length=2843bp|location=Sequence derived from alignment at sc0001288:10511..13353+ (Clytia hemisphaerica)
CTCCAACgaccaaaatttttattaaaagaacaATTCTTGGAAAAGGTGTT
ATTTGTTTAATAGAGACTTGTTACAAAGATTTGATTATGTAAGCCCAATT
TCAACTTGAtgctttttgttttggtttcttgCAGAAGCTTTACGCCAAGT
TAAAACACGTCACCGAGCTCACAGTCTTTAACACCCATCCTGGGATTTCG
CAAATATTACAATGCAACTGCAAGCATGATCGGGCAACGCGATAATCTAC
TAacggtgaaaattgctcaatcTCAACTCCTCCCAAATTTCACTGTCATC
ATCGAGCCACTCAAAAGAGTCGGCAGAACAAGTTCATCAAGTTTGAATTG
ACTCTTACCGGACAGTGAGATATTCATGCGCACTTGGCGAAGAATAAAAC
ATCTTGTGTCAACATTGGTGAAGAGTTCATACAGAAATGGAAATGCTAAT
CGACGGATGAAAACAATAGGCTAAGCAACTAGNGGCATTGCGCTGGAATT
GACATCTGTTCATCAAGTTTGAATTGACTCTTACCGGACAGTGAGATATT
CATGCGCACTTGGCGTAGAATAAAACATCTTGTGTCAACATTGGTGAAGA
GTTCAAACAGAAATGGAAATGCTAATCGACGGATGAAAACAATAGGCTAA
GCAACTAGAGAAGAGAAAATAGCCACTTCATCGTGAGTATATTGTAGTTT
GTTATACGCTTCGAATAATGGCTATATGttgatgaattttattttatttc
caaCGCCTCGATTGACCAATAAAACTTTTCGACGTGGTCATTTTTCAGGA
CtactggtaatgaatttacaacaaCGGGAATAGATCTtctgaaaaattgt
gaaaaagatCTTGATTGNgaattttattttctttccaacgCCTCGATTGA
CCAATAAAACTTTTCGACGTGGTCATTTTTCAGGACtactggtaatgaat
ttacaacaaCGGGAATAGATCTTCTGAGAAATTGTGAAAAAGATCTTGAt
tgaaatcaaatttgaaaatagaaaatactTACAGCCTCTAGATGAGGATA
TATATCTCATGCTGCCTTATATATACAAAAGCTCATTTTGTCACGGTCGA
TACTTTAGCTATTATTATACCCTCTCAGCTAATACTACCAGCGCAATCGA
TTGAAAATGCTTTGGGTCCTTTTTAAACTAATTATTTATGATGTCAATAT
TCAGAACAAACACCTGGAATGAGGTTTTccaaaaagtctttaaaaataat
tatttaaaaaaaattaattatgttcattctagattcaCTTACTTgatcaa
aaattgtcaaaaaatgtcAGTGTCTCCCAGCTTGACAGGAATCATAAANC
CCTTTTTAAACTAATTATTTATGATGTCAATATTCAGAACAAACACCTGG
AATGAGGTTTTccaaaaagtctttaaaaataattatttgaaaaaaattaa
ttatgttcattctagattcaCTTACTTgatcaaaaattgtcaaaaaatgt
cAGTGTCTCCCAGCTTGACAGGAATCATAAACCATAAGAACCATTGCATT
TTTGTCCCATTCATAGTAGTCCCATAACTTTTATAACTATTCATGCAAAT
GCCAGAAAAATAAGAGATGCTGAAAATACATCACCtcaaaaaattgcgaa
attAACTTTTGCCAAAGAAGAATGAAAGGTTCAGAAAAAGTGTTTAAGAC
AAAGNGGATCTACGTTTAACCATAACTTTTATAACTATTCATGCAAATGc
cagaaaaataagaaatgctgaaaatacaTCACCtcaaaaaattgcgaaat
tAACTTTTGCCNTCATAGTAGTCCCATAACTTTTATAACTATTCATGCAA
ATGCCAGAAAAATAAGAGATGCTGAAAATACATCACCtcaaaaaattgcg
aaattAACTTTTGCCAAAGAAGAATGAAAGGTTCAGAAAAAGTGTTTAAG
ACAAAGTATTTTCAGGGTTTTCAGGACTTTTTTGACATAAAAGGTCCAGG
CTCTTagggacatgttttttttttgactgtacgaaaatgccgattttcaa
ccaacccggttcaaatcggcactaacagagacagctgaaccctttcttat
cgttattcaaaaataagaaaatagattagTAGCTCTGTCCGATACTTTTT
GTCCGATCTTAAAAGCTTTTATGGAACTTAAGACATCACTTGTTGAAtcc
ggagtatttcaggatgaaaaaaatcatagtctATTTCGGATTTATAAAGT
CGGCTCTATATTTGGCCTTTGTCGTGNCTTAAAAGCTTTTATGGAACTTA
AGACATCACTTGTTGAAtccggagtatttcaggatgaaaaaaatcatagt
ccATTTCGGATTTATAAAGTCGGCTCTATATTTGGCCTTTGTCGTGTCCA
GTTTATATATATACGAAACTTATATCAGGGTGTAGCTAATGGATTGAATT
TTCACATCgacctcttttttttggaaaaacccggAGGAAAGTGGGATCAA
AtggatcatttttgaaatctaggtgcTAATTCTAATCGTATATATTTTCC
ACAGTGTTTAAATCATATAAATATGGTAgtaaaatgtttcattttgaaaa
agtctTAGTCGGTGCACCTCTTTTATCGGACATCTTTTCGTATTGATTTA
CGTTAACAAACTCCCTGAAATTATTTCCAAAATTATTATATTTGCTGATG
ACTTATCCTTGTTTTCATTTATTATAGACCATATTCGCTATTCTCAAGAA
CTAAAAAGTGACATGCCGAACATTAGTGGTTTGGTTCATCAATGGATGGC
ATCCTTCATCCTTGATCTTTCTTAGCAGGAAGTTGAAGAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035300-exon-sc0001288-1491911889:10511..11192 | TCONS_00035300-exon-sc0001288-1491911889:10511..11192 | Clytia hemisphaerica | exon |
| TCONS_00035300-exon-sc0001288-1510915933:10511..11192 | TCONS_00035300-exon-sc0001288-1510915933:10511..11192 | Clytia hemisphaerica | exon |
| TCONS_00035300-exon-sc0001288-1575043694:10511..11192 | TCONS_00035300-exon-sc0001288-1575043694:10511..11192 | Clytia hemisphaerica | exon |
| TCONS_00035300-exon-sc0001288-1491911889:13238..13353 | TCONS_00035300-exon-sc0001288-1491911889:13238..13353 | Clytia hemisphaerica | exon |
| TCONS_00035300-exon-sc0001288-1510915933:13238..13353 | TCONS_00035300-exon-sc0001288-1510915933:13238..13353 | Clytia hemisphaerica | exon |
| TCONS_00035300-exon-sc0001288-1575043694:13238..13353 | TCONS_00035300-exon-sc0001288-1575043694:13238..13353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001288 | supercontig | sc0001288:10511..13353 + |
Blast
The following BLAST results are available for this feature:
|
