TCONS_00035299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035299
Unique NameTCONS_00035299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035299 ID=TCONS_00035299|Name=TCONS_00035299|organism=Clytia hemisphaerica|type=transcript|length=831bp
GGCATAAGAGCATTTATAAGCATTTTTTTCCTGTGGTCGTCAAGTAAGCT
AGAGATGCCTTTTATCTTGTTTAGTTTGAGATATGCTTGGCCTGGGCATT
CCAGTTAAGGTTTTCATCAAAGATCATACCGAGATATTTCACTTTCTCCT
TGCATTCAAGAGTGTCAACTTGAAATTGGATAGGGACCAGCCTCTTGCAT
TCCTTCAGTTTGTTTGCTCTTCCAAAGAATATGACTTCGGTTTTGCCCGT
TAGTTTACAGTTAGTTTATTTTGGCTGAACCAATGTCCGACTTCAGAAAG
TTGGCCAGATAGATCTTTTCTAAGCCTCACGGGGCAGTCAGAACTGACAG
CGATGATGGTAACGTCTGCGTAAAGATGGTGGAACACAGAAGGTCGAATA
CTTTGACCAATATTGTTTATGTAAAGGAGAAATAACAATGGTCCGAGGAC
CGATCCTTGTGAAACCCTGTATGCGCATTCGTTCATCATGTCCGAGCAAG
TATCTCCTAGGAGTGTACATTGAAGACAATCTGACAGATAAGATTCAAAC
CAGGAGAATGAGGTGTCCCTAAATGTGGTAGTGTACGGAACTTCTGATTC
ATAGGTACTTTTCATGTGTGGGTTTGAATCCCAtcaactttggcaaattt
caaaatgtcaaagttAAACTCCAAAATTGACAAAGTCCAACTTAGAAACA
TTCCAGTCATActtctttaattttgcatatatactgtagctagagacctg
aaatttgttgggagaattctttgatggtgttagaatattattatactgta
taaaaatatttgtaaaatatttagtatattt
Run BLAST on NCBI

protein sequence of TCONS_00035299-protein

>TCONS_00035299-protein ID=TCONS_00035299-protein|Name=TCONS_00035299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MKSTYESEVPYTTTFRDTSFSWFESYLSDCLQCTLLGDTCSDMMNECAYR
VSQGSVLGPLLFLLYINNIGQSIRPSVFHHLYADVTIIAVSSDCPVRLRK
DLSGQLSEVGHWFSQNKLTVN
Run BLAST on NCBI

transcript from alignment at sc0001287:3971..4801

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035299 ID=TCONS_00035299|Name=TCONS_00035299|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0001287:3971..4801 (Clytia hemisphaerica)
aaatatactaaatattttacaaatatttttatacagtataataatattct
aacaccatcaaagaattctcccaacaaatttcaggtctctagctacagta
tatatgcaaaattaaagaagTATGACTGGAATGTTTCTAAGTTGGACTTT
GTCAATTTTGGAGTTTaactttgacattttgaaatttgccaaagttgaTG
GGATTCAAACCCACACATGAAAAGTACCTATGAATCAGAAGTTCCGTACA
CTACCACATTTAGGGACACCTCATTCTCCTGGTTTGAATCTTATCTGTCA
GATTGTCTTCAATGTACACTCCTAGGAGATACTTGCTCGGACATGATGAA
CGAATGCGCATACAGGGTTTCACAAGGATCGGTCCTCGGACCATTGTTAT
TTCTCCTTTACATAAACAATATTGGTCAAAGTATTCGACCTTCTGTGTTC
CACCATCTTTACGCAGACGTTACCATCATCGCTGTCAGTTCTGACTGCCC
CGTGAGGCTTAGAAAAGATCTATCTGGCCAACTTTCTGAAGTCGGACATT
GGTTCAGCCAAAATAAACTAACTGTAAACTAACGGGCAAAACCGAAGTCA
TATTCTTTGGAAGAGCAAACAAACTGAAGGAATGCAAGAGGCTGGTCCCT
ATCCAATTTCAAGTTGACACTCTTGAATGCAAGGAGAAAGTGAAATATCT
CGGTATGATCTTTGATGAAAACCTTAACTGGAATGCCCAGGCCAAGCATA
TCTCAAACTAAACAAGATAAAAGGCATCTCTAGCTTACTTGACGACCACA
GGAAAAAAATGCTTATAAATGCTCTTATGCC

Coding sequence (CDS) from alignment at sc0001287:3971..4801

>TCONS_00035299 ID=TCONS_00035299|Name=TCONS_00035299|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0001287:3971..4801 (Clytia hemisphaerica)
ATGAAAAGTACCTATGAATCAGAAGTTCCGTACACTACCACATTTAGGGA
CACCTCATTCTCCTGGTTTGAATCTTATCTGTCAGATTGTCTTCAATGTA
CACTCCTAGGAGATACTTGCTCGGACATGATGAACGAATGCGCATACAGG
GTTTCACAAGGATCGGTCCTCGGACCATTGTTATTTCTCCTTTACATAAA
CAATATTGGTCAAAGTATTCGACCTTCTGTGTTCCACCATCTTTACGCAG
ACGTTACCATCATCGCTGTCAGTTCTGACTGCCCCGTGAGGCTTAGAAAA
GATCTATCTGGCCAACTTTCTGAAGTCGGACATTGGTTCAGCCAAAATAA
ACTAACTGTAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020607XLOC_020607Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035299-proteinTCONS_00035299-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035299-exon-sc0001287-1491911889:3971..4801TCONS_00035299-exon-sc0001287-1491911889:3971..4801Clytia hemisphaericaexon
TCONS_00035299-exon-sc0001287-1510915933:3971..4801TCONS_00035299-exon-sc0001287-1510915933:3971..4801Clytia hemisphaericaexon
TCONS_00035299-exon-sc0001287-1575043694:3971..4801TCONS_00035299-exon-sc0001287-1575043694:3971..4801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001287supercontigsc0001287:3971..4801 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.855573	0.94556	1.16247	0.947744	1.15379	1.64113	1.90662	1.92226	1.20162	0.714435	0.520086	0.797729	0.53108	0.889717	0.41242	0.570796	0.0856367	0.482762	0.394019	0.253792	0.551477	0.484184	0.0711606	0.475656	0.244957	0.437237	0.782107	0.751217	0.379848	0.387005
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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