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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035293 ID=TCONS_00035293|Name=TCONS_00035293|organism=Clytia hemisphaerica|type=transcript|length=4612bp ctgcaatctgattggttaaaaagagtacaatatatcttatattttacatg tacaaaatacaAATTGACGAAAAggtgttgttgcattgtagcggtagcag caatctaacgtcactttgctacaaaagccTTGCGCTTtcttccaacacaa aaagtgcattttttgggtcaccaataaaccagttatcagacatttgttCG TAcaaaatggaaatatttcactcgttccggattttccgtatattttcctc gcctaaaggttcggaaaatattgtacgagAAAATCTTGGaactcataaaa tatttctcatattgtactcgcaactgtccgataactattacatattgtGA GACCATAAATAGTTGACTTCTGGTATGGGAAACCAGAAAGTACAAACGAA TAATCATTTGCTATCATGTTTATTGCTTACCATGTCGCACcatttacaaa agaaaaatgataaaaagaataAACCTCACAAGAAACTACgcaaattattt catttattgCTCCTCAACCAAGGTATCCAAAATAATATGAATTCAGAAAA ATATCTAATTCTTCGATACATGATTAAAGTTTTTGATGAAAGCTTCATTT GACTGTTTAATGTAATTTCTGTAATGACTTTCCATCAGTATCTTAATATC CATAACATGCAAGACATCTTTGTTGTCTTCCAAACTGCTCAGCAAAGACT CGACTCTCTTCAGATATCTTACAAATTGATCAACGTTTGCAGTGTCCTTA TTGGATGACTCTGGAGTATGTTCGAATACCATAAATAGGTCTCCTTTAGG ATTCGAGTCACAATAGTAAGTTATACTATCAAATAATCTCCccatcaagt aaaaaaatccaAGCCAGAAATTTGATAGTAATAAACCATCAAAATGAAAT GCTACTAAAGAACATCTTTGAATTGCATCAATATTTTGCATCAAATAATC AATTATctctttctttgtctttttatcAGTGCCAAGGGATCCCAAATCAA TAATGCAAGGTGTGTGGATATTGTCAAGTCTGTCTGAGGTTGAAAATTTC TTGCTTACCAGCTGTGAATCATGACAAGCTGTCATTACAGGTTCTACAAA AGACTCATTATTGGAAACGAGTGTAACATTATTTGTTACATTGAACTTCT CATGGAAtgtctcaaaaaaatttaaaagtttttgttcaAGATTTGTATGT TCAAGGTCTTGTAGCTTACGATAAATTTCCATTGGCCCAGGGGCACATAC ACTTGATGAATAGATACCTGGTAAAGTTTGACCAATGGTTGGTGTAACAT TATCTAAATctttaaattgaaataaatcTGGCATGAGATGGTGTTCTGTC ATATCTGCCGAATCCCATTGGAAAGCGTTAAATTGCTTTGAGGTTGAATG TTTTGTGATATTTTTGTTGTGGTCAGTTTCTGAATGATCACCAATtgtat tgttgttttttgttttcattctctGGTTCAAAGACCCTTCCCTGAAATTC ATACTCTGTTTTTGATTCTTATACTGGCCTTGAGATGACAACATAGCAAA CATGGGTGAAATATAATGCTCGGTAGGTTCAATACTAAAGTCTTCAATAA ATCTCCTGGAAAAATATCCTTTCAATTTGTTTAGTCGTTGTTGATCAGTA TGATTCACTTTCTCAAACGTCATTCGATTGTTTTGGATTGTTTCTTTCTG CAAAGAGCATGATTCTTCAATGTACTCTCTGATTGAGTCTAAAAATGGTT TTGATAGTTGAGAAAAATCAACTAATTCACCTATGGCTTGTGGTGTAGAG TTACTAAAAGCAGCTTCCTTCAGGTCTTCATATAGTTTCATATGATGGCA GACCTCAGGTTGAAATTTGGTTGCGATAATGTAAACTTCTGAGTTTCCAG GTTTACTAGGACcaggtttgaaaaatgtaaCTTCTTCAAACACGCTTGCC AGTAAATACATGAAAACAATAGTGTATTTCTGAAAACAGGTGAACATTTT AAGGACGAAGGATCCATTTTCTGCAAGAATACTCAGTGCAGTGATAATTT CCCACAGAAACAATGACGCCACACTCATTTCTTGTTCACCAGGGTCGTTA GAACAATCAATACTTCCatctgcagtaatcaaatttattttctgtTGGCC CATTTTAtcaacaaaatatttgaaattgtttGGATTCTTGATATTTCCAG TTAAGTCTGGACAAAAATCCCAGCGATCAAGTGTATTTATCATGAAGCGG TCATCTGGTATCATGTGACCGAGGTCGTTCCCTTCATAATATGGATTCAA AGTTGTACTACACCAGTCTAACTTGAAATTATATCCAAATCTGTTTTGGA TAAAATGGTTCAGTGATGCAATAAAAGCTCCAGGAGCTTCGCAAAGATGA AACGATTTTAGATAACGATTCTCTATACATTCTTTTGGAATGATCTCAAA TGTTCCAAGAATGGAGTAGAATTTGGCCCATGCTTGGGTTGGTAGCTCCA CTTTGAGTTGTGTTCGTAGCTTGTACGGTACGCTTGAAAATTTGTGCATG TTGGAAGTATGGCGATGCCATGATGCTATATCAACAGAATTCAATAGTGA TTTAACTGCATTTAAATCTGTCTTTTCGATTTCAAGTGATGCAAAAAATG CCTCTTCATCACCAATAAAATCATCACTTTCTTTTGGGCAAGAGACATGA TAAATTTTACTGTTTGAAATAAACCACTGGTTGTCAAACTCTTTGTACAA TTCTCTATTATTATTGCTCattctgaaaaaacaaaaataaatgaaaGGGT ACgagagaaaacaaaataaaaaaacttcagATATTATACAAAAACTTTTC ATCAAGAATGATTACAATACAGAAtggataagaaaaatgaatcaaaCATT ATTAAAAACGGGCTAAAATGTGTAAGGACTTTAGCATCTGGAGAATTTTG TAGATAAGGCATAAAGCGCCCCAAACAATAAGAAAAACTATGTATCGGAT TGGAAAAATGTCTCATGGGAGCCCTTCTGATCAGATTTTTTTGGCAGAAC CAAcggaaaaaaacaaaagtaaagtAGAATTTCTTGACGAAACTTCTTGA ACAatatttttcatccaaattttatttttggataTAGTTTTTAAAGGAac tagaaatttcagaaaatttttaaagatgaTTTAGTCAATAGAATAGCTGA gcatgaaaaacttcaatcaggctaactgcatgaaaaacttcaatcaggCT AACTGCATAAAATGATCAATCACTGGCTCTTAATAATGAACATAATCTTT GGATACTTTGATACATCTTAAATTTACGATAAATTATATCATTTCTATTT CGGTAGATTTGTGTAGATTGCATCAAAATAgaattataaaaacaaaatat aaacaaaagcTAATGAAATACAACAGACTCATTTTCCAAAATAATTGGAA AATCTAACATACCTTAATACCTTAACTTTCCCAtgccttttatttacaaa aattaatttttgtgccttaaatttttgggcaatttttggggaatataata ttttatttttgtgtaTCTTGTAATTTCTAGGATATGTTTTGATGAATTTA GGTAAAGAGGGCAAAAAAGACATGTTTCTTTAAAGGGGACACTATTATGA TATTCCCACGTTATGATGATCAATAATTGACGCACCATTTAAATTTGACA CAGTCAAGTGTGTGAAAATATGCCTTTTTTACACGTCTTAAATTTTTGGT CAGGTTTTGTGCACAAAAAGAATGTGAAAATTGTTAGGGTTAAGGTACCC TCTAGACCATTTAATATGTGAGCAGTATGATAATCAAAATACACCTATCT TTAACGAAGTATTGAGACTATTGAACTTTGTTAAAACTTACAAAATAAAG GCTTCTAATCTTAAATTTACAAATCGAATAATATAGAAATTATCGACTAT GTACAAAATAACATAGAACATTCATTTAATTATTATTTAAGGCTCTCCAA GAGGTATTaaaaaagatatagcatctccAGTTGCTCCCCATGAAGCTCTG TTGGTACGATAAATCACAACCCAGACAGCAATGCCAATTATCCATACTAG TGCACCTATTCCAGACCGTATAACGTTCTTCTTGATCTCATTTTGTCCTT CAAATTGCTCATTAAAAAAAGCCACTTTGAAAAACCAAATTGTATTGATA AACCATAAAAACGGTAAAAATGCAAAACCACCACGGAAGTATATTCTTGA AAGTCTCACTTTCTCTGCATCTGGTGTTTTACTCAAATCCATTGTTGAta gatgttttttatttattgttggtttaaaaaaactttttttttattgtgct ttctacaaaaaaagttaagaatgaaATAATGAATAAGGCAATAGGGGCAT CTAgagaaatggaaaataaaattttcccaAAGATTTATTAAAGGTCATTC AAGAAAGGAAAGATAGCTTTAGAAGCTTCATCAATCCACTAGGTTCATGG CAGTAGTAATCGGTAAAAATTTCTCATAAAATTTTCTGTAGCAGTACATA ATTAATTATTCGATAGACCATCATCGTTGCAATTGCCAAAAACAACTAGT ATGATATTGCAG Run BLAST on NCBI transcript from alignment at sc0001287:10081..14900- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035293 ID=TCONS_00035293|Name=TCONS_00035293|organism=Clytia hemisphaerica|type=transcript|length=4820bp|location=Sequence derived from alignment at sc0001287:10081..14900- (Clytia hemisphaerica) CTGCAATCTGATTGGTTAAAAAGAGTACAATATATCTTATATTTTACATG
TACAAAATACAAATTGACGAAAAGGTGTTGTTGCATTGTAGCGGTAGCAG
CAATCTAACGTCACTTTGCTACAAAAGCCTTGCGCTTTCTTCCAACACAA
AAAGTGCATTTTTTGGGTCACCAATAAACCAGTTATCAGACATTTGTTCG
TACAAAATGGAAATATTTCACTCGTTCCGGATTTTCCGTATATTTTCCTC
GCCTAAAGGTTCGGAAAATATTGTACGAGAAAATCTTGGAACTCATAAAA
TATTTCTCATATTGTACTCGCAACTGTCCGATAACTATTACATATTGTGA
GACCATAAATAGTTGACTTCTGGTATGGGAAACCAGAAAGTACAAACGAA
TAATCATTTGCTATCATGTTTATTGCTTACCATGTCGCACCATTTACAAA
AGAAAAATGATAAAAAGAATAAACCTCACAAGAAACTACGCAAATTATTT
CATTTATTGCTCCTCAACCAAGGTATCCAAAATAATATGAATTCAGAAAA
ATATCTAATTCTTCGATACATGATTAAAGTTTTTGATGAAAGCTTCATTT
GACTGTTTAATGTAATTTCTGTAATGACTTTCCATCAGTATCTTAATATC
CATAACATGCAAGACATCTTTGTTGTCTTCCAAACTGCTCAGCAAAGACT
CGACTCTCTTCAGATATCTTACAAATTGATCAACGTTTGCAGTGTCCTTA
TTGGATGACTCTGGAGTATGTTCGAATACCATAAATAGGTCTCCTTTAGG
ATTCGAGTCACAATAGTAAGTTATACTATCAAATAATCTCCCCATCAAGT
AAAAAAATCCAAGCCAGAAATTTGATAGTAATAAACCATCAAAATGAAAT
GCTACTAAAGAACATCTTTGAATTGCATCAATATTTTGCATCAAATAATC
AATTATCTCTTTCTTTGTCTTTTTATCAGTGCCAAGGGATCCCAAATCAA
TAATGCAAGGTGTGTGGATATTGTCAAGTCTGTCTGAGGTTGAAAATTTC
TTGCTTACCAGCTGTGAATCATGACAAGCTGTCATTACAGGTTCTACAAA
AGACTCATTATTGGAAACGAGTGTAACATTATTTGTTACATTGAACTTCT
CATGGAATGTCTCAAAAAAATTTAAAAGTTTTTGTTCAAGATTTGTATGT
TCAAGGTCTTGTAGCTTACGATAAATTTCCATTGGCCCAGGGGCACATAC
ACTTGATGAATAGATACCTGGTAAAGTTTGACCAATGGTTGGTGTAACAT
TATCTAAATCTTTAAATTGAAATAAATCTGGCATGAGATGGTGTTCTGTC
ATATCTGCCGAATCCCATTGGAAAGCGTTAAATTGCTTTGAGGTTGAATG
TTTTGTGATATTTTTGTTGTGGTCAGTTTCTGAATGATCACCAATTGTAT
TGTTGTTTTTTGTTTTCATTCTCTGGTTCAAAGACCCTTCCCTGAAATTC
ATACTCTGTTTTTGATTCTTATACTGGCCTTGAGATGACAACATAGCAAA
CATGGGTGAAATATAATGCTCGGTAGGTTCAATACTAAAGTCTTCAATAA
ATCTCCTGGAAAAATATCCTTTCAATTTGTTTAGTCGTTGTTGATCAGTA
TGATTCACTTTCTCAAACGTCATTCGATTGTTTTGGATTGTTTCTTTCTG
CAAAGAGCATGATTCTTCAATGTACTCTCTGATTGAGTCTAAAAATGGTT
TTGATAGTTGAGAAAAATCAACTAATTCACCTATGGCTTGTGGTGTAGAG
TTACTAAAAGCAGCTTCCTTCAGGTCTTCATATAGTTTCATATGATGGCA
GACCTCAGGTTGAAATTTGGTTGCGATAATGTAAACTTCTGAGTTTCCAG
GTTTACTAGGACCAGGTTTGAAAAATGTAACTTCTTCAAACACGCTTGCC
AGTAAATACATGAAAACAATAGTGTATTTCTGAAAACAGGTGAACATTTT
AAGGACGAAGGATCCATTTTCTGCAAGAATACTCAGTGCAGTGATAATTT
CCCACAGAAACAATGACGCCACACTCATTTCTTGTTCACCAGGGTCGTTA
GAACAATCAATACTTCCATCTGCAGTAATCAAATTTATTTTCTGTTGGCC
CATTTTATCAACAAAATATTTGAAATTGTTTGGATTCTTGATATTTCCAG
TTAAGTCTGGACAAAAATCCCAGCGATCAAGTGTATTTATCATGAAGCGG
TCATCTGGTATCATGTGACCGAGGTCGTTCCCTTCATAATATGGATTCAA
AGTTGTACTACACCAGTCTAACTTGAAATTATATCCAAATCTGTTTTGGA
TAAAATGGTTCAGTGATGCAATAAAAGCTCCAGGAGCTTCGCAAAGATGA
AACGATTTTAGATAACGATTCTCTATACATTCTTTTGGAATGATCTCAAA
TGTTCCAAGAATGGAGTAGAATTTGGCCCATGCTTGGGTTGGTAGCTCCA
CTTTGAGTTGTGTTCGTAGCTTGTACGGTACGCTTGAAAATTTGTGCATG
TTGGAAGTATGGCGATGCCATGATGCTATATCAACAGAATTCAATAGTGA
TTTAACTGCATTTAAATCTGTCTTTTCGATTTCAAGTGATGCAAAAAATG
CCTCTTCATCACCAATAAAATCATCACTTTCTTTTGGGCAAGAGACATGA
TAAATTTTACTGTTTGAAATAAACCACTGGTTGTCAAACTCTTTGTACAA
TTCTCTATTATTATTGCTCATTCTGAAAAAACAAAAATAAATGAAAGGGT
ACGAGAGAAAACAAAATAAAAAAACTTCAGATATTATACAAAAACTTTTC
ATCAAGAATGATTACAATACAGAATGGATAAGAAAAATGAATCAAACATT
ATTAAAAACGGGCTAAAATGTGTAAGGACTTTAGCATCTGGAGAATTTTG
TAGATAAGGCATAAAGCGCCCCAAACAATAAGAAAAACTATGTATCGGAT
TGGAAAAATGTCTCATGGGAGCCCTTCTGATCAGATTTTTTTGGCAGAAC
CAACGGAAAAAAACAAAAGTAAAGTAGAATTTCTTGACGAAACTTCTTGA
ACAATATTTTTCATCCAAATTTTATTTTTGGATATAGTTTTTAAAGGAAC
TAGAAATTTCAGAAAATTTTTAAAGATGATTTAGTCAATAGAATAGCTGA
GCATGAAAAACTTCAATCAGGCTAACTGCATGAAAAACTTCAATCAGGCT
AACTGCATAAAATGATCAATCACTGGCTCTTAATAATGAACATAATCTTT
GGATACTTTGATACATCTTAAATTTACGATAAATTATATCATTTCTATTT
CGGTAGATTTGTGTAGATTGCATCAAAATAGAATTATAAAAACAAAATAT
AAACAAAAGCTAATGAAATACAACAGACTCATTTTCCAAAATAATTGGAA
AATCTAACATACCTTAATACCTTAACTTTCCCATGCCTTTTATTTACAAA
AATTAATTTTTGTGCCTTAAATTTTTGGGCAATTTTTGGGGAATATAATA
TTTTATTTTTGTGTATCTTGTAATTTCTAGGATATGTTTTGATGAATTTA
GGTAAAGAGGGCAAAAAAGACATGTTTCTTTAAAGGGGACACTATTATGA
TATTCCCACGTTATGATGATCAATAATTGACGCACCATTTAAATTTGACA
CAGTCAAGTGTGTGAAAATATGCCTTTTTTACACGTCTTAAATTTTTGGT
CAGGTTTTGTGCACAAAAAGAATGTGAAAATTGTTAGGGTTAAGGTACCC
TCTAGACCATTTAATATGTGAGCAGTATGATAATCAAAATACACCTATCT
TTAACGAAGTATTGAGACTATTGAACTTTGTTAAAACTTACAAAATAAAG
GCTTCTAATCTTAAATTTACAAATCGAATAATATAGAAATTATCGACTAT
GTACAAAATAACATAGAANCAGGCCCGGCGGAACAACCATAAAAGCGGAG
GGGCTAAAGGATCTAATGAGGTAGAATTTGCCATGAATTGGAGAAAAAAG
TCTATTTTGCTCAAAAGTGGAGGGGCTTCAGCCTCCCCAGCCTCCCCGCT
TCCGCCGGGCCTGTAATCTTAAATTTACAAATCGAATAATATAGAAATTA
TCGACTATGTACAAAATAACATAGAACATTCATTTAATTATTATTTAAGG
CTCTCCAAGAGGTATTAAAAAAGATATAGCATCTCCAGTTGCTCCCCATG
AAGCTCTGTTGGTACGATAAATCACAACCCAGACAGCAATGCCAATTATC
CATACTAGTGCACCTATTCCAGACCGTATAACGTTCTTCTTGATCTCATT
TTGTCCTTCAAATTGCTCATTAAAAAAAGCCACTTTGAAAAACCAAATTG
TATTGATAAACCATAAAAACGGTAAAAATGCAAAACCACCACGGAAGTAT
ATTCTTGAAAGTCTCACTTTCTCTGCATCTGGTGTTTTACTCAAATCCAT
TGTTGATAGATGTTTTTTATTTATTGTTGGTTTAAAAAAACTTTTTTTTT
ATTGTGCTTTCTACAAAAAAAGTTAAGAATGAAATAATGAATAAGGCAAT
AGGGGCATCTAGAGAAATGGAAAATAAAATTTTCCCAAAGATTTATTAAA
GGTCATTCAAGAAAGGAAAGATAGCTTTAGAAGCTTCATCAATCCACTAG
GTTCATGGCAGTAGTAATCGGTAAAAATTTCTCATAAAATTTTCTGTAGC
AGTACATAATTAATTATTCGATAGACCATCATCGTTGCAATTGCCAAAAA
CAACTAGTATGATATTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00035293-exon-sc0001287-1575043694:10939..14900 | TCONS_00035293-exon-sc0001287-1575043694:10939..14900 | Clytia hemisphaerica | exon |
| TCONS_00035293-exon-sc0001287-1575043694:10081..10730 | TCONS_00035293-exon-sc0001287-1575043694:10081..10730 | Clytia hemisphaerica | exon |
| TCONS_00035293-exon-sc0001287-1510915933:10939..14900 | TCONS_00035293-exon-sc0001287-1510915933:10939..14900 | Clytia hemisphaerica | exon |
| TCONS_00035293-exon-sc0001287-1510915933:10081..10730 | TCONS_00035293-exon-sc0001287-1510915933:10081..10730 | Clytia hemisphaerica | exon |
| TCONS_00035293-exon-sc0001287-1491911889:10939..14900 | TCONS_00035293-exon-sc0001287-1491911889:10939..14900 | Clytia hemisphaerica | exon |
| TCONS_00035293-exon-sc0001287-1491911889:10081..10730 | TCONS_00035293-exon-sc0001287-1491911889:10081..10730 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0001287 | supercontig | sc0001287:10081..14900 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
| GO:0032259 | methylation |
Vocabulary: Molecular Function
| Term | Definition |
| GO:0008168 | methyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0032259 |
methylation |
| molecular_function |
GO:0008168 |
methyltransferase activity |
Blast
BLAST of TCONS_00035293 vs. Swiss-Prot (Human)
Match: CMTR2 (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 OS=Homo sapiens GN=CMTR2 PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 5.350e-69 Identity = 162/416 (38.94%), Postives = 222/416 (53.37%), Query Frame = -3
Query: 1578 PFIYFCFFRMSNNNRELYKEFDNQWFISNSKIYHVSCPKESDDFIGDEEAFFASLEIEKTDLNAVKSLLNSVDIASWHRHTSNMHKFSSVPYKLRTQLKVELPTQAWAKFYSILGTFEIIPKECIENRYLKSFHLCEAPGAFIASLNHFIQ-NRFGYNFKLDWCSTTLNPYYEGNDLGHMIPDDRFMINTLDRWDFCPDLTGNI---KNPNNFKYFVDKMGQQKINLITADGSIDCSNDPGEQEMSVASLFLWEIITALSILAENGSFVLKMFTCFQKYTIVFMYLLASVFEEVTFFKPGPSKPGNSEVYIIATKFQPEVCHHMKLYEDLKEAAFSNSTPQAIGELVDFSQLSKPFL-DSIREYIEESCSL----QKETIQNNRMTFEKVNHTDQQRLNKLKGYFSRRFIEDFSIE 2798
P I F + N K +N+W + P S+ F D A L++ K LN VK+LL+ + WH HT+ +K + +R + EL TQAW KF+ IL +F +IP+E +N L S HLCEAPGAFIASLNH+++ +RF ++ W + TLNPY+E ND MI DDR + NTL W F PD TG+I K + F+ M ++L+TADGS DC +PGEQE V+SL E++TAL+ L GSFVLKMFT F+ +I MYLL F++V FKP SK GNSEVY+ VC H K E + S T E+ + + DS + EE C Q ETI N FE + +Q++LN L+ + F++ F ++
Sbjct: 20 PDILADIFELFAKNFSYGKPLNNEWQL----------PDPSEIFTCDHTELNAFLDL-KNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHW--SWVANTLNPYHEANDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMA--TVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYV--------VCLHYKGREAI-HPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLK 411
The following BLAST results are available for this feature:
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