TCONS_00035288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035288
Unique NameTCONS_00035288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035288 ID=TCONS_00035288|Name=TCONS_00035288|organism=Clytia hemisphaerica|type=transcript|length=508bp
CTTTTTTGGAAAGGAAACATGTAATTGTTAACACCCCCACTGGTCGTGGG
AAGAGCTTTTGTTTTCAAATTTTGCCCTATCTTGTGGATAGCCTATCAAA
CAGGCCTTATGGTATTAGTGTGCTGTTAGTTGTCAGTCCATTGATTGCTC
TGATGAAAGACCAAGTTAACTCTCTCACTGCCAAAGGGTTGAAGGCTGTT
CACTTGACAGAACAAAGTAACTTTGATAGCATCATAGACACAACTGATGA
ATCCATTATCCCAACGTTTGTTTTTGTGTCACCGGAAAGCCTAGCTCAAA
AGAAGCTACGGAATCTGATTACCTCTGACGAGTTTAGAAAACACTGCGTG
GGAGTTGCTATTGATGAAGCTCATTGTATCACAAGCTGGTAGGGTTATGc
cttgttgttttttcttataGCTAAACAGAATAATAAGGGTGTTTAACTTC
ATGCTTGTGTATCAATGGAGGGAAACTGTAATTTGAATATAAACCTAGAA
GATAAATA
Run BLAST on NCBI

protein sequence of TCONS_00035288-protein

>TCONS_00035288-protein ID=TCONS_00035288-protein|Name=TCONS_00035288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
FLERKHVIVNTPTGRGKSFCFQILPYLVDSLSNRPYGISVLLVVSPLIAL
MKDQVNSLTAKGLKAVHLTEQSNFDSIIDTTDESIIPTFVFVSPESLAQK
KLRNLITSDEFRKHCVGVAIDEAHCITSW
Run BLAST on NCBI

transcript from alignment at sc0001286:46692..47199

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035288 ID=TCONS_00035288|Name=TCONS_00035288|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0001286:46692..47199 (Clytia hemisphaerica)
TATTTATCTTCTAGGTTTATATTCAAATTACAGTTTCCCTCCATTGATAC
ACAAGCATGAAGTTAAACACCCTTATTATTCTGTTTAGCtataagaaaaa
acaacaaggCATAACCCTACCAGCTTGTGATACAATGAGCTTCATCAATA
GCAACTCCCACGCAGTGTTTTCTAAACTCGTCAGAGGTAATCAGATTCCG
TAGCTTCTTTTGAGCTAGGCTTTCCGGTGACACAAAAACAAACGTTGGGA
TAATGGATTCATCAGTTGTGTCTATGATGCTATCAAAGTTACTTTGTTCT
GTCAAGTGAACAGCCTTCAACCCTTTGGCAGTGAGAGAGTTAACTTGGTC
TTTCATCAGAGCAATCAATGGACTGACAACTAACAGCACACTAATACCAT
AAGGCCTGTTTGATAGGCTATCCACAAGATAGGGCAAAATTTGAAAACAA
AAGCTCTTCCCACGACCAGTGGGGGTGTTAACAATTACATGTTTCCTTTC
CAAAAAAG

Coding sequence (CDS) from alignment at sc0001286:46692..47199

>TCONS_00035288 ID=TCONS_00035288|Name=TCONS_00035288|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0001286:46692..47199 (Clytia hemisphaerica)
CTACCAGCTTGTGATACAATGAGCTTCATCAATAGCAACTCCCACGCAGT
GTTTTCTAAACTCGTCAGAGGTAATCAGATTCCGTAGCTTCTTTTGAGCT
AGGCTTTCCGGTGACACAAAAACAAACGTTGGGATAATGGATTCATCAGT
TGTGTCTATGATGCTATCAAAGTTACTTTGTTCTGTCAAGTGAACAGCCT
TCAACCCTTTGGCAGTGAGAGAGTTAACTTGGTCTTTCATCAGAGCAATC
AATGGACTGACAACTAACAGCACACTAATACCATAAGGCCTGTTTGATAG
GCTATCCACAAGATAGGGCAAAATTTGAAAACAAAAGCTCTTCCCACGAC
CAGTGGGGGTGTTAACAATTACATGTTTCCTTTCCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020599XLOC_020599Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035288-proteinTCONS_00035288-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035288-exon-sc0001286-1491911889:46692..47199TCONS_00035288-exon-sc0001286-1491911889:46692..47199Clytia hemisphaericaexon
TCONS_00035288-exon-sc0001286-1510915933:46692..47199TCONS_00035288-exon-sc0001286-1510915933:46692..47199Clytia hemisphaericaexon
TCONS_00035288-exon-sc0001286-1575043694:46692..47199TCONS_00035288-exon-sc0001286-1575043694:46692..47199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001286supercontigsc0001286:46692..47199 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.252888	0.152549	0	0.199976	0.495405	0.360639	0.0790233	0.315654	0.32781	0	0	0.623515	0.0912976	0	0	0	0	0.136047	0.123687	1.52873	1.13696	0	0	0.131697	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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