TCONS_00035284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035284
Unique NameTCONS_00035284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035284 ID=TCONS_00035284|Name=TCONS_00035284|organism=Clytia hemisphaerica|type=transcript|length=367bp
GAGAATCTCATCCTTTTACCATCTTCAGCATGTTTTCCTACCTTTTTGAC
GCCCATTTTATCCAAAGAGTTGACCCGAGAATCTCCTTGGCTGGTACTAT
CAGCACTATCTAGAGAATCTTCTATAGTTGAAGTAGCGTCCTTTATATTA
AATCCTTCGTTAATATGTCCTTTTTTATTATCACATAAGTCAGGTGTAGA
TTCAACGTCATCTAAAGTATTAGAAAGTGAGGTTATATTCTCAACTGCTT
TGTTTGGTATAACatagattttcttttcaactcCACTGATTCTTGAAATC
CGTCTCGATATACATAAATAAATTACCAGTAATATAATACTGGGAACGAT
ATAGCTCAAGACTACAA
Run BLAST on NCBI

protein sequence of TCONS_00035284-protein

>TCONS_00035284-protein ID=TCONS_00035284-protein|Name=TCONS_00035284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
VVLSYIVPSIILLVIYLCISRRISRISGVEKKIYVIPNKAVENITSLSNT
LDDVESTPDLCDNKKGHINEGFNIKDATSTIEDSLDSADSTSQGDSRVNS
LDKMGVKKVGKHAEDGKRMRF
Run BLAST on NCBI

transcript from alignment at sc0001286:94..460

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035284 ID=TCONS_00035284|Name=TCONS_00035284|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0001286:94..460 (Clytia hemisphaerica)
TTGTAGTCTTGAGCTATATCGTTCCCAGTATTATATTACTGGTAATTTAT
TTATGTATATCGAGACGGATTTCAAGAATCAGTGgagttgaaaagaaaat
ctatGTTATACCAAACAAAGCAGTTGAGAATATAACCTCACTTTCTAATA
CTTTAGATGACGTTGAATCTACACCTGACTTATGTGATAATAAAAAAGGA
CATATTAACGAAGGATTTAATATAAAGGACGCTACTTCAACTATAGAAGA
TTCTCTAGATAGTGCTGATAGTACCAGCCAAGGAGATTCTCGGGTCAACT
CTTTGGATAAAATGGGCGTCAAAAAGGTAGGAAAACATGCTGAAGATGGT
AAAAGGATGAGATTCTC

Coding sequence (CDS) from alignment at sc0001286:94..460

>TCONS_00035284 ID=TCONS_00035284|Name=TCONS_00035284|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0001286:94..460 (Clytia hemisphaerica)
GTAGTCTTGAGCTATATCGTTCCCAGTATTATATTACTGGTAATTTATTT
ATGTATATCGAGACGGATTTCAAGAATCAGTGgagttgaaaagaaaatct
atGTTATACCAAACAAAGCAGTTGAGAATATAACCTCACTTTCTAATACT
TTAGATGACGTTGAATCTACACCTGACTTATGTGATAATAAAAAAGGACA
TATTAACGAAGGATTTAATATAAAGGACGCTACTTCAACTATAGAAGATT
CTCTAGATAGTGCTGATAGTACCAGCCAAGGAGATTCTCGGGTCAACTCT
TTGGATAAAATGGGCGTCAAAAAGGTAGGAAAACATGCTGAAGATGGTAA
AAGGATGAGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020595XLOC_020595Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035284-proteinTCONS_00035284-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035284-exon-sc0001286-1491911889:94..460TCONS_00035284-exon-sc0001286-1491911889:94..460Clytia hemisphaericaexon
TCONS_00035284-exon-sc0001286-1510915933:94..460TCONS_00035284-exon-sc0001286-1510915933:94..460Clytia hemisphaericaexon
TCONS_00035284-exon-sc0001286-1575043694:94..460TCONS_00035284-exon-sc0001286-1575043694:94..460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001286supercontigsc0001286:94..460 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.224543	0	0	0	3.7076	3.38938	1.15474	0.540527	0	0.234377	0	0.149544	0.169906	0.310174	0	0.234587	0	0.390933	0.716081	0.552806	0.753451	0	0	0	0	0	0.175555	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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