TCONS_00035283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035283
Unique NameTCONS_00035283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035283 ID=TCONS_00035283|Name=TCONS_00035283|organism=Clytia hemisphaerica|type=transcript|length=244bp
AGATGCTGCATTGTATAGTAAAGAGAAAAGCAAGCTTGAATTACAGATTT
TGAACATAATTTAGAATAACTGTAGCTAGGATTCTGTTTTTATGCTGTGT
TGTGTTTGTATTCTCTTCATTTTGGTTTTACTCGTATTTCGATTTCGTCC
ATATTATagtaaaaatcttttgatgtaTGTAAATCTTTGAACAAATATTT
CCAGTTATGGTAAatgcaaaaactaaatttgagtAGATTTTTTN
Run BLAST on NCBI

transcript from alignment at sc0001285:52091..52334

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035283 ID=TCONS_00035283|Name=TCONS_00035283|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0001285:52091..52334 (Clytia hemisphaerica)
NAAAAAATCTactcaaatttagtttttgcatTTACCATAACTGGAAATAT
TTGTTCAAAGATTTACAtacatcaaaagatttttactATAATATGGACGA
AATCGAAATACGAGTAAAACCAAAATGAAGAGAATACAAACACAACACAG
CATAAAAACAGAATCCTAGCTACAGTTATTCTAAATTATGTTCAAAATCT
GTAATTCAAGCTTGCTTTTCTCTTTACTATACAATGCAGCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020594XLOC_020594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035283-exon-sc0001285-1491911889:52091..52334TCONS_00035283-exon-sc0001285-1491911889:52091..52334Clytia hemisphaericaexon
TCONS_00035283-exon-sc0001285-1510915933:52091..52334TCONS_00035283-exon-sc0001285-1510915933:52091..52334Clytia hemisphaericaexon
TCONS_00035283-exon-sc0001285-1575043694:52091..52334TCONS_00035283-exon-sc0001285-1575043694:52091..52334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001285supercontigsc0001285:52091..52334 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.61883	3.47694	1.57333	0	0	2.69656	0	0	1.42157	0.880423	3.93249	2.07817	0	1.44837	4.51021	2.00929	1.2664	4.94734	0	0	12.439	8.63036	2.75422	8.53511	0	0	0	3.703	2.12209	1.90768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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