TCONS_00035279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035279
Unique NameTCONS_00035279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length936

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035279 ID=TCONS_00035279|Name=TCONS_00035279|organism=Clytia hemisphaerica|type=transcript|length=936bp
GAAAATATCCTGAGAGTCTTGTGCGTTCTCAAAACATCTGGGACGTGTTT
GACCATTATGTGGATATAAGGTGTCACTGGGTAAGACCAGTCGTAACCAC
ATTCATTCATCTTTTTGAGCTTGTACACCCATGCAATTGcCTTCAACTCA
AAGTCGTCAATTTCAGCTGGTGTCAATTCTGGTCTGTTCATGATCATGTA
CAGCTTTTCAAAAGCCTGAAATGACTTTGGTTTACCTCATCCATATCAAG
GATTGAATGAAACAACCCATCTTCCAGCAGATCAGTGACGCGCAGTAAAA
GATGGAGTTCATCCACACAATAATGCTCGATTGGAACGTTTTCCAGGATA
GGATCGTCTTTGCATCCACGTTGTTTTGACCAACTCTTCTTCCCTGTAAA
TGTTGGATCTTGTCTGAAATAGATagGTTATTATCACCTCTGTTCCCTTG
TGATGTCACAATCAATACACGAGTTGTCCGAAGTAGCTTGTTTCATGCCG
AGTATCATGAGAAGAAACTGTTGATAAAAAGTGAGATCATCACCTGAAGA
AACAAAAGATACTTTGCGTTTCACCCGACCTACCTAAAGCTGACGAATGA
GCATTAACTCGGTGATGTGGAATTTTACGGCTTTACATTTCAACTTTTGC
TCATACGGAAAATACCTGTCTTCCATTTGAAAGATGGTTCATCAGATTCG
ATTGATGATTGGCTCGAAGATTGTGATTGGCTTGTCGATTGTTGTGAGGA
CGATTCCGACCATAGTGATGATCCTAAATATAAATTGTATTTATTTCAAA
ctaaatgtattttttatttacgaCAAAACTGCAATTTCTCTATTTTTTCC
GTACCGAACTTCTATTGTGGAATGTACTGCTAGTGTCCTAGTTTATGGTT
TACCTTTCTTGCAAGAAACTGTTATCTTGGTTGCGG
Run BLAST on NCBI

transcript from alignment at sc0001282:22197..25095-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035279 ID=TCONS_00035279|Name=TCONS_00035279|organism=Clytia hemisphaerica|type=transcript|length=2899bp|location=Sequence derived from alignment at sc0001282:22197..25095- (Clytia hemisphaerica)
GAAAATATCCTGAGAGTCTTGTGCGTTCTCAAAACATCTGGGACGTGTTT
GACCATTATGTGGATATAAGGTGTCACTGGGTAAGACCAGTCGTAACCAC
ATTCATTCATCTTTTTGAGCTTGTACACCCATGCAATTGCATAAAAAATG
TAAATTAATTAATTTTTTAGGCTTGAAATCTGGAGTTATTGGACAAGCTT
GGCACTAAAAATTAGTTGATAGTACAAATTGTATTTACACCTTCAACTCA
AAGTCGTCAATTTCAGCTGGTGTCAATTCTGGTCTGTTCATGATCATGTA
CAGCTTTTCAAAAGCCTGAAATGGTAAGAAAATATTGCTCAAAATTTCTT
TTCGTGATTTATCAAGACAAACATAGATTTCTTCTCGGAAAGCTCTGAAG
AGGAAAAAATGGAGGACAAGAAATAGCTCAATAAATAGTTTGGTTAGATC
CAAAGTTACCGTCTATAACTTTCTTGTCGGAGCTACTTGGTTTTTGGGCA
GGAACTCGTCAAAGTGATCTGGTAACTTGGCTAGCATTCTTTTCCTATCA
TTTCCCATTAAAGAGGTCCATTCCACCTTGTTCTTTTTGTTCCTCCAGAA
TTTGAGGGTGATACCAATTCCTTTCATCGCCGAGACTAGCTTTGACTGAA
TTTCTGTGTTTCCATTTTTCTACAAAAATAATTCTTATATGTTCTCACAC
AACAGAAGCACAATGACATCTCAAATCACGCCCTTTGATGCTACACTTTT
TGCTTTACATGCTGAACCATGTGAGGGATTAATTATTAGGTTGTTTTTAT
TATACAGACTTTGGTTTACCTCATCCATATCAAGGATTGAATGAAACAAC
CCATCTTCCAGCAGATCAGTGACGCGCAGTAAAAGATGGAGTTCATCCAC
ACAATAATGCTCGATTGGAACGTTTTCCAGGATAGGATCGTCTTTGCATC
CACGTTGTTTTGACCAACTCTTCTTCCCTGTAAATGTTGGATCTTGTCTG
AAATAGATAGGTACATGATTTTTTTAATTAAAGCAAACAGCATTATTGTA
TTGAAAATATTGAGCATTTTTCGTATGTGTGGATGGTGTAGAAGCTATAA
AACTCTGAACATGCTTTTATTTTTTCTATGTAGCTTTCTACGTTAGAGTA
ACTTTATAAAAATCATTAATTGATGCATTAATCTTTAGGTTATTATCACC
TCTGTTCCCTTGTGATGTCACAATCAATACACGAGTTGTCCGAAGTAGCT
TGTTTCATGCCGAGTATCATGAGAAGAAACTGTTGATAAAAAGGTAAATA
GATTGATGTGAAACTATTATAAACTGATACCGAGGCGATTTTTCTTTCTT
TAAAAAACTGCAAAGTGACCTGTTACAATTAAGCATAAATAATAAGATTT
ATTTAAAGTGTTGCCTACGCGAGTACGCGATTTTTCTACCAGACCAGACC
TCTGTACTTACTTTGTAATCTCCACCAATAAACAATTCAACATCCAAATC
TTTGCCACCAACCACAATTGTGTTTTTTCTTTGCAATTTCGTTGACTTCA
GTGATCAAATCTTGGAAGCATTCTTTCACACACTCGTACGACTCACTGGC
CATCCCAACTCCAACCAAGTTGTTCCCTACATAGAAATAATTTAATTCAA
ATGTTATTTTTTCAAACAACTTGACAATCCACACGTAAATTAAATGCATG
CTGTCGTTCTCAGGGGTTAGAAAATATAGCTCCCCTTTTAAGGAAGTTAG
GGACCCTTTTGCCCGTCACGCCCCCACCAAGAAAACAGAACAGAATCATG
CTCACCAGAACTTTGGTAAAACGAACCAGATTCTTCTATAATTTTGTATG
ACATGACCACAAGATTTGATTTTCGAGTTAGTCTAGTTCCATCACCACTG
ATTTTGAGCTATTATAACAAAAGAAATATAGATTAATTGCTTAGGCTCTT
CTCAAAAAATAGGGCTCTGTTTCTAAGAAAAAATTAAATGTCTTTATCAG
GACAAATGAAGTTGCTCAAAAAAAGGGCTACCCTTTTCTCAGGAAAAATA
AGGCTGTTTGTTAGAAAAAATAGTAAGGCTCTTTCCTCATAAATTGGTGA
TTTTTTTCTAGAGGAAAGGGGGGTCTTTAGACTAACCATTATGCTTTTCT
CTGCCGACTTCACTCTCTCATCAGTTTCCAGCTGGCCCATTAGTCTCATC
TGAGCGCCTACTGTCTTTCCAGGAGTTGGTTCNTTAGACTAACCATTATG
CTTTTCTCTGCCGACTTCACTCTCTCGTCAGTTTCCAGCTGACCCATTAG
TCTCATCTGAGCGCCTACTGTCTTTCCAGGAGTTGGTTCGATATCAAAAC
TTCTTGAAATCTGTTTCTGGGTCTTTTCCACAGCATGAGTGCGCGGAAGT
CCAAACGCGATTTGAGAGAGCTCGTGATAGACTTTTGTGGAGACTGTATA
CCGATCCAATGCATAAATAACCGCTTTAGTCCTTTCAATTTCAGTGAGAT
CATCACCTGAAGAAACAAAAGATACTTTGCGTTTCACCCGACCTACCTAA
AGCTGACGAATGAGCATTAACTCGGTGATGTGGAATTTTACGGCTTTACA
TTTCAACTTTTGCTCATACGGAAAATACCTGTCTTCCATTTGAAAGATGG
TTCATCAGATTCGATTGATGATTGGCTCGAAGATTGTGATTGGCTTGTCG
ATTGTTGTGAGGACGATTCCGACCATAGTGATGATCCTAAATATAAATTG
TATTTATTTCAAACTAAATGTATTTTTTATTTACGACAAAACTGCAATTT
CTCTATTTTTTCCGTACCGAACTTCTATTGTGGAATGTACTGCTAGTGTC
CTAGTTTATGGTTTACCTTTCTTGCAAGAAACTGTTATCTTGGTTGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020590XLOC_020590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035279-exon-sc0001282-1575043694:24956..25095TCONS_00035279-exon-sc0001282-1575043694:24956..25095Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1575043694:24773..24855TCONS_00035279-exon-sc0001282-1575043694:24773..24855Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1575043694:24086..24288TCONS_00035279-exon-sc0001282-1575043694:24086..24288Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1575043694:23803..23907TCONS_00035279-exon-sc0001282-1575043694:23803..23907Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1575043694:22197..22601TCONS_00035279-exon-sc0001282-1575043694:22197..22601Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1510915933:24956..25095TCONS_00035279-exon-sc0001282-1510915933:24956..25095Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1510915933:24773..24855TCONS_00035279-exon-sc0001282-1510915933:24773..24855Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1510915933:24086..24288TCONS_00035279-exon-sc0001282-1510915933:24086..24288Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1510915933:23803..23907TCONS_00035279-exon-sc0001282-1510915933:23803..23907Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1510915933:22197..22601TCONS_00035279-exon-sc0001282-1510915933:22197..22601Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1491911889:24956..25095TCONS_00035279-exon-sc0001282-1491911889:24956..25095Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1491911889:24773..24855TCONS_00035279-exon-sc0001282-1491911889:24773..24855Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1491911889:24086..24288TCONS_00035279-exon-sc0001282-1491911889:24086..24288Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1491911889:23803..23907TCONS_00035279-exon-sc0001282-1491911889:23803..23907Clytia hemisphaericaexon
TCONS_00035279-exon-sc0001282-1491911889:22197..22601TCONS_00035279-exon-sc0001282-1491911889:22197..22601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001282supercontigsc0001282:22197..25095 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.502196	0.360135	0.0615335	0.193465	1.2147	0.905235	1.67582	1.72758	1.03683	0.623706	0.738879	1.02648	0.738656	1.02659	0.56091	0.747698	1.14458	0.668861	1.58598	0.475163	0.219125	0.747593	0.475764	0.707554	12.0869	10.7749	0.427233	0	0.162493	0.055185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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