TCONS_00035271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035271
Unique NameTCONS_00035271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035271 ID=TCONS_00035271|Name=TCONS_00035271|organism=Clytia hemisphaerica|type=transcript|length=464bp
GGTACGAGGTCGTCATcaaatgaatcaaaaattatgatccataaaaaaag
aagaagggaGTTCTCTGGGAAAATGTCGATCCactgatcatttttgaaaa
tcgttTTCAGCTTAACAAAAAAAGCAGGGATTTCGGCAAAAAGTTTGAAG
CATAAAATAAGtaacaaaaccaaaacaaaatatcaacagaaaaaaaatga
aacaaaaaatatataatattcgATAAAAACATGTACATGGGTTATACGTT
ATTCATTCAGATTTGAGAAAGGTTTCTctccagaaaaatttaaaaccccT
TCGAAGGGACGCCATGAGATCGAAAACCTAGCAATATTATTTCCAAGCAA
TTTTAAATAGAGCTTCAAACCCCATTTtaccaatcaaaatttttttgaga
caaTAGTTGTGAAAGGAAATATGCTTTTCAAGGGTGACACAATTTTTCCT
GGAGAAAAACCTTT
Run BLAST on NCBI

transcript from alignment at sc0001279:60177..60640

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035271 ID=TCONS_00035271|Name=TCONS_00035271|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at sc0001279:60177..60640 (Clytia hemisphaerica)
AAAGGTTTTTCTCCAGGAAAAATTGTGTCACCCTTGAAAAGCATATTTCC
TTTCACAACTAttgtctcaaaaaaattttgattggtaAAATGGGGTTTGA
AGCTCTATTTAAAATTGCTTGGAAATAATATTGCTAGGTTTTCGATCTCA
TGGCGTCCCTTCGAAggggttttaaatttttctggagAGAAACCTTTCTC
AAATCTGAATGAATAACGTATAACCCATGTACATGTTTTTATcgaatatt
atatattttttgtttcattttttttctgttgatattttgttttggttttg
ttaCTTATTTTATGCTTCAAACTTTTTGCCGAAATCCCTGCTTTTTTTGT
TAAGCTGAAaacgattttcaaaaatgatcagtGGATCGACATTTTCCCAG
AGAACtcccttcttctttttttatggatcataatttttgattcatttgAT
GACGACCTCGTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020582XLOC_020582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035271-exon-sc0001279-1491911889:60177..60640TCONS_00035271-exon-sc0001279-1491911889:60177..60640Clytia hemisphaericaexon
TCONS_00035271-exon-sc0001279-1510915933:60177..60640TCONS_00035271-exon-sc0001279-1510915933:60177..60640Clytia hemisphaericaexon
TCONS_00035271-exon-sc0001279-1575043694:60177..60640TCONS_00035271-exon-sc0001279-1575043694:60177..60640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001279supercontigsc0001279:60177..60640 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37311	0.735248	1.62197	1.27757	0.501659	0	0.196199	0.400076	0.173118	0.26016	0	0.309947	0.216921	0	0	0	0	0.319208	0.567878	0	1.39507	1.86484	1.2364	1.44687	0	0.610394	3.53501	3.83015	1.44859	2.30073
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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