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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035270 ID=TCONS_00035270|Name=TCONS_00035270|organism=Clytia hemisphaerica|type=transcript|length=921bp
GCTTGTAAAGACATTTTCATTATTTGGCGAGGATCCAAAATCGACTGCTG
GTGAAGATTTCTTCGGTGTTTTCAACGGATTCCTCAATTCATTCGCTGAA
TCAAAAGGTGAGAATGTTCAAATGCAGAAACAGAAAGAAGAAGAGGAGAG
AAAAGCCAAAAGTCTTGCACAGCAAAGAGAGAAAGAGCGTCAACGTAGCG
CGGCAAAGAAGCTAATGTCGGATAATTTATCCGCCGAAGATAAACGGAAA
TCTTTATCGGAAAGAAGTCCGGGTGAATTCGATGATTTGATTTCTGCATT
ACGGACAGGTGATGTTTTCGGTGATGAAATGACAATGTTTAGTAAACAGG
GCCGGAAAAGGACTGGGAAACAGCGGAATGCTGTCAACGCCCCTAAAAAG
ATGTCGGTAATAGATCGAGACCGACGTGTGGACCAAACAGCTATAGCGGA
AATGTTATGATAAGTCACGTGATTGGTAGACCGGAAGGTGAACAGGTTTT
TAACTTGGTAGAGGACCGGATTTTGTCCGGACAGTGAAGTTAGCGGAAGT
AGTAGTTCTATTCTTGAATATTGCTTCTGTCCTTTATAAAATAACGAATC
GAAAGCTCCATTGTATATGAATACTGAATAGTGTGCGCAATTTACCTCTT
CGACCTGAAACCGAATTGGAGAGGTGCCGTGATGTCCCACTGTGGGAGAT
ACTTCATCCGATCAAAGGTTTTATGCCTATGCAAGCCAGACTTCGCCCTG
TTGCATCTTTCACCGTTATTTATTGAATGGCTTGAAATACAAATTGGAAA
ACCATGAAAATTGATGGCTTATCGATTATATGTTATattcacttgaaaaa
aaaacaatgttatTTTTGTAGACGAAATGAATGAACGGTTTAGaaaaatg
gtggaaaaagtATTCATACAC Run BLAST on NCBI protein sequence of TCONS_00035270-protein >TCONS_00035270-protein ID=TCONS_00035270-protein|Name=TCONS_00035270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
LVKTFSLFGEDPKSTAGEDFFGVFNGFLNSFAESKGENVQMQKQKEEEER
KAKSLAQQREKERQRSAAKKLMSDNLSAEDKRKSLSERSPGEFDDLISAL
RTGDVFGDEMTMFSKQGRKRTGKQRNAVNAPKKMSVIDRDRRVDQTAIAE
ML Run BLAST on NCBI transcript from alignment at sc0001279:57998..60121+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035270 ID=TCONS_00035270|Name=TCONS_00035270|organism=Clytia hemisphaerica|type=transcript|length=2124bp|location=Sequence derived from alignment at sc0001279:57998..60121+ (Clytia hemisphaerica)
GCTTGTAAAGACATTTTCATTATTTGGCGAGGATCCAAAATCGACTGCTG
GTGAAGATTTCTTCGGTGTTTTCAACGGATTCCTCAATTCATTCGCTGTA
AGCTTTTGAAACGACAAttatcaaatattttaaaaagtcaGCATATGTCA
TCTCTAGTTCATGTGCTTACTCTAGCACTGTGCAAAAAAAAGCCTGCTTA
TATTCGCTAGTTGCCATTTTTGCATAATATTAAGAacttgggctcttcca
gaaaatgttcgtgtatggagggtggaggatatatagGGGGTGTAATTTTT
GTCAACTGATGCCTGTTCAGGGGTCAAAAGTTACAATGTTCGGGGGGAGG
GGGTAAATTTCCCAAAactgttatatcctccaccccctcccccatattca
aatttttctggaaaagccccgTGGGCAAGATATAGGCAGTGATTTCACTT
TCATTGATTgtttttacttattttcttattaattttctttttcgtcaCAG
GAATCAAAAGGTGAGAATGTTCAAATGCAGAAACAGAAAGAAGAAGAGGA
GAGAAAAGCCAAAAGTCTTGCACAGGTAAACAAAAACGTCAAAGTCATTT
GCTGGTAATCCCTTTTCACATAAATTCAAAGTCTTTTAGATTTGAAGGTA
AATTTTAAATGAccatcaatagaccttttcataaatgatGTCACGAGCAA
CGCTTGTCAATTGTCTTGTCTCTTCAAcatattagcgaggttaagcaagt
gtttatttagaccgtTCAATGTGATATTGTAGGTCTATACATGAGATTTA
acttgcatggtttgctttggcaagttatggCCTACGGTATTGCATTGaac
ggtcaaaataaacctGTGCTTAACATCGCTATTACTATGGTAATTTACTC
CTTTCAGAGGTTTTTATAAGAAGTTTACTCTGTTATAAGAGTAACACATG
CAGACTCAAGTGATATGAAATTACCTTGGTAAtgttttcaaaacgaggca
gtcgtttcacacaaaaaaaatataaaaggcATAATTATTCAACGAGGAGA
AGCAGTTTCCTGTCTCCCGAAAACACTATAAAATAAGCCACTAAAATctc
ttttaaaggttttgtttttacataagtgtttccgtttcatatcagacaca
tatttcatatcaagacagtgtcttgctattgttatattatgttgATATaa
gcaagaaaatgtttttcttttcctctttctgaccaatcttgctccacata
catgtcaatccaatgtgaaaaagcttgtaaattaaaattgatgagtaagc
aaacgttatcactcttatttaaaaacaaaacccttaAATCAAAAgtcact
caatttttttttcttataactttaGCAAAGAGAGAAAGAGCGTCAACGTA
GCGCGGCAAAGAAGCTAATGTCGGATAATTTATCCGCCGAAGATAAACGG
AAATCTTTATCGGAAAGAAGTCCGGGTGAATTCGATGATTTGATTTCTGC
ATTACGGACAGGTGATGTTTTCGGTGATGAAATGACAATGTTTAGTAAAC
AGGGCCGGAAAAGGACTGGGAAACAGCGGAATGCTGTCAACGCCCCTAAA
AAGATGTCGGTAATAGATCGAGACCGACGTGTGGACCAAACAGCTATAGC
GGAAATGTTATGATAAGTCACGTGATTGGTAGACCGGAAGGTGAACAGGT
TTTTAACTTGGTAGAGGACCGGATTTTGTCCGGACAGTGAAGTTAGCGGA
AGTAGTAGTTCTATTCTTGAATATTGCTTCTGTCCTTTATAAAATAACGA
ATCGAAAGCTCCATTGTATATGAATACTGAATAGTGTGCGCAATTTACCT
CTTCGACCTGAAACCGAATTGGAGAGGTGCCGTGATGTCCCACTGTGGGA
GATACTTCATCCGATCAAAGGTTTTATGCCTATGCAAGCCAGACTTCGCC
CTGTTGCATCTTTCACCGTTATTTATTGAATGGCTTGAAATACAAATTGG
AAAACCATGAAAATTGATGGCTTATCGATTATATGTTATattcacttgaa
aaaaaaacaatgttatTTTTGTAGACGAAATGAATGAACGGTTTAGaaaa
atggtggaaaaagtATTCATACAC Coding sequence (CDS) from alignment at sc0001279:57998..60121+ >TCONS_00035270 ID=TCONS_00035270|Name=TCONS_00035270|organism=Clytia hemisphaerica|type=CDS|length=1377bp|location=Sequence derived from alignment at sc0001279:57998..60121+ (Clytia hemisphaerica)
CTTGTAAAGACATTTTCATTATTTGGCGAGGATCCAAAATCGACTGCTGG
TGAAGATTTCTTCGGTGTTTTCAACGGATTCCTCAATTCATTCGCTGAAT
CAAAAGGTGAGAATGTTCAAATGCAGAAACAGAAAGAAGAAGAGGAGAGA
AAAGCCAAAAGTCTTGCACAGCAAAGAGAGAAAGAGCGTCAACGTAGCGC
GGCAAAGAAGCTAATGTCGGATAATTTATCCGCCGAAGATAAACGGAAAT
CTTTATCGGAAAGAAGTCCGGGTGAATTCGATGATTTGATTTCTGCATTA
CGGACAGGTGATGTTTTCGGTGATGAAATGACAATGTTTAGTAAACAGGG
CCGGAAAAGGACTGGGAAACAGCGGAATGCTGTCAACGCCCCTAAAAAGA
TGTCGGTAATAGATCGAGACCGACGTGTGGACCAAACAGCTATAGCGGAA
ATGTTATGACTTGTAAAGACATTTTCATTATTTGGCGAGGATCCAAAATC
GACTGCTGGTGAAGATTTCTTCGGTGTTTTCAACGGATTCCTCAATTCAT
TCGCTGAATCAAAAGGTGAGAATGTTCAAATGCAGAAACAGAAAGAAGAA
GAGGAGAGAAAAGCCAAAAGTCTTGCACAGCAAAGAGAGAAAGAGCGTCA
ACGTAGCGCGGCAAAGAAGCTAATGTCGGATAATTTATCCGCCGAAGATA
AACGGAAATCTTTATCGGAAAGAAGTCCGGGTGAATTCGATGATTTGATT
TCTGCATTACGGACAGGTGATGTTTTCGGTGATGAAATGACAATGTTTAG
TAAACAGGGCCGGAAAAGGACTGGGAAACAGCGGAATGCTGTCAACGCCC
CTAAAAAGATGTCGGTAATAGATCGAGACCGACGTGTGGACCAAACAGCT
ATAGCGGAAATGTTATGACTTGTAAAGACATTTTCATTATTTGGCGAGGA
TCCAAAATCGACTGCTGGTGAAGATTTCTTCGGTGTTTTCAACGGATTCC
TCAATTCATTCGCTGAATCAAAAGGTGAGAATGTTCAAATGCAGAAACAG
AAAGAAGAAGAGGAGAGAAAAGCCAAAAGTCTTGCACAGCAAAGAGAGAA
AGAGCGTCAACGTAGCGCGGCAAAGAAGCTAATGTCGGATAATTTATCCG
CCGAAGATAAACGGAAATCTTTATCGGAAAGAAGTCCGGGTGAATTCGAT
GATTTGATTTCTGCATTACGGACAGGTGATGTTTTCGGTGATGAAATGAC
AATGTTTAGTAAACAGGGCCGGAAAAGGACTGGGAAACAGCGGAATGCTG
TCAACGCCCCTAAAAAGATGTCGGTAATAGATCGAGACCGACGTGTGGAC
CAAACAGCTATAGCGGAAATGTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035270-exon-sc0001279-1491911889:57998..58094 | TCONS_00035270-exon-sc0001279-1491911889:57998..58094 | Clytia hemisphaerica | exon |
| TCONS_00035270-exon-sc0001279-1510915933:57998..58094 | TCONS_00035270-exon-sc0001279-1510915933:57998..58094 | Clytia hemisphaerica | exon |
| TCONS_00035270-exon-sc0001279-1575043694:57998..58094 | TCONS_00035270-exon-sc0001279-1575043694:57998..58094 | Clytia hemisphaerica | exon |
| TCONS_00035270-exon-sc0001279-1491911889:58498..58572 | TCONS_00035270-exon-sc0001279-1491911889:58498..58572 | Clytia hemisphaerica | exon |
| TCONS_00035270-exon-sc0001279-1510915933:58498..58572 | TCONS_00035270-exon-sc0001279-1510915933:58498..58572 | Clytia hemisphaerica | exon |
| TCONS_00035270-exon-sc0001279-1575043694:58498..58572 | TCONS_00035270-exon-sc0001279-1575043694:58498..58572 | Clytia hemisphaerica | exon |
| TCONS_00035270-exon-sc0001279-1491911889:59373..60121 | TCONS_00035270-exon-sc0001279-1491911889:59373..60121 | Clytia hemisphaerica | exon |
| TCONS_00035270-exon-sc0001279-1510915933:59373..60121 | TCONS_00035270-exon-sc0001279-1510915933:59373..60121 | Clytia hemisphaerica | exon |
| TCONS_00035270-exon-sc0001279-1575043694:59373..60121 | TCONS_00035270-exon-sc0001279-1575043694:59373..60121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001279 | supercontig | sc0001279:57998..60121 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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