TCONS_00035268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035268
Unique NameTCONS_00035268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035268 ID=TCONS_00035268|Name=TCONS_00035268|organism=Clytia hemisphaerica|type=transcript|length=240bp
CACTCACAGGTTTTGCATAAAAAGACCAGCTAAATGCCATTCCAAATCAT
TCAAACATTTTTGCATCAAAGTTGAAGTAGAGAAGAGCATAATGAGGTTA
GGAACGTTGTGGTTAGCAACTTGTTTGGCTTTTGCCAGTGGAGCCTGGGT
ACCAGAAATGGAAAACGAAGGTCTTTACGAAGGAGACATGATTTTAGATC
CTGACCAGCAGAAGGAGGTCGAAGATGGAACTTTCACTTT
Run BLAST on NCBI

transcript from alignment at sc0001279:38523..39230+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035268 ID=TCONS_00035268|Name=TCONS_00035268|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at sc0001279:38523..39230+ (Clytia hemisphaerica)
CACTCACAGGTTTTGCATAAAAAGACCAGCTAAATGCCATTCCAAATCAT
TCAAACATTTTTGCATCAAAGTTGAAGTAGAGAAGAGCATAATGAGGTTA
GGAACGTTGTGGTTAGCAACTTGTTTGGCTTTTGCCAGTGGAGCCTGGGT
ACCAGAAATGGAAAGTAAGTTAAAGCAAGCTTATTGATTTAAGAAAATCT
TTTNAGTTAGGAACGTTGTGGTTAGCAACTTGTTTGGCTTTTGCCAGTGG
AGCCTGGGTACCAGAAATGGAAAGTAAGTTAAAGCAAGCTTATTGgttta
agaaaatcttttacatttttcagaTCATTTGGCGCATTGggcttttttaa
aataaatttgaatatgggggggtgattgatataacattttttagaaatta
acCCCcaggacattgtgaattttgacccccggacaagcatcagttgaccc
cctggacattgaaAATAACCCCCACACAGAGCAAGTTTATTCCCGGGACA
GGGCAaactttgtagatttttcactaatttttggATTTGAGCATCCTGTC
TCCGTGTAACTGATCAATTTCAATTGACTTGTTAAATTATCAACTGTAAC
AACGGTCTTCCTATTCTTTCATATCATTTTAGACGAAGGTCTTTACGAAG
GAGACATGATTTTAGATCCTGACCAGCAGAAGGAGGTCGAAGATGGAACT
TTCACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020580XLOC_020580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035268-exon-sc0001279-1491911889:38523..38686TCONS_00035268-exon-sc0001279-1491911889:38523..38686Clytia hemisphaericaexon
TCONS_00035268-exon-sc0001279-1510915933:38523..38686TCONS_00035268-exon-sc0001279-1510915933:38523..38686Clytia hemisphaericaexon
TCONS_00035268-exon-sc0001279-1575043694:38523..38686TCONS_00035268-exon-sc0001279-1575043694:38523..38686Clytia hemisphaericaexon
TCONS_00035268-exon-sc0001279-1491911889:39155..39230TCONS_00035268-exon-sc0001279-1491911889:39155..39230Clytia hemisphaericaexon
TCONS_00035268-exon-sc0001279-1510915933:39155..39230TCONS_00035268-exon-sc0001279-1510915933:39155..39230Clytia hemisphaericaexon
TCONS_00035268-exon-sc0001279-1575043694:39155..39230TCONS_00035268-exon-sc0001279-1575043694:39155..39230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001279supercontigsc0001279:38523..39230 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.877103	0	0	0	3.15384	0	1.6834	7.72373	3.7216	4.48571	2.22291	6.35037	0	0	0.0978147	0.0348275	0	0	3.04105	1.92456	0	1.48553	3.80531	181.8	230.122	0	0	4.22163	1.45541
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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