TCONS_00035257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035257
Unique NameTCONS_00035257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035257 ID=TCONS_00035257|Name=TCONS_00035257|organism=Clytia hemisphaerica|type=transcript|length=387bp
ATAATGTTATGTTCCAAAAAGGATTGTGTATAAAATAATAAGAAATTGAC
ATTTAAAAGTTCAATTAAATCAAACGTTAAAAGCATCGTCCTCTTGTTGC
AAGATCTATGAAATCCTAGATTTTTTTACCTAATACCAACGTTTTGACTG
GTCGATATAGCATCCAAATACGACGACACGTCTCCTACAATACGCAAATA
CTTTACTCGTACCGagattttccaatatttttcctcgcctgAAGGCTCAG
AGAGATATTACGAAAAAATCCCGGAGCTCGTAAAATATTtgtcgtattgc
actcgaagtcatgcgataactagtacacatggcatcttctttattttcaa
ttttgaactATACTTTGGAACTTAGAGTAAGACGCTG
Run BLAST on NCBI

transcript from alignment at sc0001278:41862..42248

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035257 ID=TCONS_00035257|Name=TCONS_00035257|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0001278:41862..42248 (Clytia hemisphaerica)
CAGCGTCTTACTCTAAGTTCCAAAGTATagttcaaaattgaaaataaaga
agatgccatgtgtactagttatcgcatgacttcgagtgcaatacgacaAA
TATTTTACGAGCTCCGGGATTTTTTCGTAATATCTCTCTGAGCCTTcagg
cgaggaaaaatattggaaaatctCGGTACGAGTAAAGTATTTGCGTATTG
TAGGAGACGTGTCGTCGTATTTGGATGCTATATCGACCAGTCAAAACGTT
GGTATTAGGTAAAAAAATCTAGGATTTCATAGATCTTGCAACAAGAGGAC
GATGCTTTTAACGTTTGATTTAATTGAACTTTTAAATGTCAATTTCTTAT
TATTTTATACACAATCCTTTTTGGAACATAACATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020576XLOC_020576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035257-exon-sc0001278-1491911889:41862..42248TCONS_00035257-exon-sc0001278-1491911889:41862..42248Clytia hemisphaericaexon
TCONS_00035257-exon-sc0001278-1510915933:41862..42248TCONS_00035257-exon-sc0001278-1510915933:41862..42248Clytia hemisphaericaexon
TCONS_00035257-exon-sc0001278-1575043694:41862..42248TCONS_00035257-exon-sc0001278-1575043694:41862..42248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001278supercontigsc0001278:41862..42248 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398626	0	1.57971	1.32471	1.07514	0.84959	0.768746	1.71096	0.839787	0.416085	0.605793	1.08596	0.662785	0.550647	0.226353	0.121456	0	0.153359	2.11874	0.886845	0.405418	0.563975	0.228529	0.207766	1.71195	0.577606	0	0.583342	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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