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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035251 ID=TCONS_00035251|Name=TCONS_00035251|organism=Clytia hemisphaerica|type=transcript|length=1162bp
AAATTAATTATATTTACCTTTTATCGTTAGCTCGTCAGTTTGTTTCCTCG
TTCTTCACGTTCGCTCGTTCATTTTTCATTACTTCAGCATGCAAATTCCC
CTAGATTTAAACTCATAAACTTATAAAATCatatgttttaattttagcaa
ATATTAtgatagaaaaataaaataagaacctattgaaacgaaaacgaaaa
tgGCCGATAATGAATTCGAAATTGGTATCACTTCAGaagatGATTATGGT
CCCGAGTATCCGGCATTTTCACTATCCGTAAAAGAAACAGATACAATTGG
TCACATCAAAACGAGAATTGAAGAACGTATTAAAGTGCCGAGTCAGCATT
TTTATGTACGAAAACGTGGAATGATAGAggttgaaaatgagaaaacgGTG
AGGGATTATCTCCAGGATGGGGAAAAGGAATATATggagtttgttttgat
atacaTTCCACAATTTTTGATTCGTGTATGTTTCACACGGAGTGGTCATG
TTGAAGAACAAACTGTACTACTAACTGAAAAACATCGTAAGAATCTTGGT
GATTTAGtcacagagattgagaaaaaatataaacttAAGAAAGGTGAATT
GAAATATGTTCATCAAGAGTCTGATAGTTCATCGGATGAAACAAATGATG
ACGTATATACAAAATGGTTGATGAATTTGTGGCGAGAGAGgaaatatgtt
ttgaattttgaaacagaCGCAAATGTCGAAGACAAGAAATGCTCGGTGAT
GTGATATTTTAAAAGTGAAATGGTAGATACATCAGTTATCGTTTTGAAAT
ATACTGAAGACATGAAAACACTTTTATAACCTATGAAACTATCTCAAAAA
GGCAAATAGAAACATTTGACTGTCGTCTTACAAAACGCACTTTCAAAAAC
AACATGTCGATTCTATAAAAACTCTGacaatttgaaatgttttttgataG
TAGAGACAGCTTGTGGCATTTAATGAATCATATTGAAGCTATGACATGAA
TCATATGATGGTAAGTCTCTCATTTATTCGTCGAATTTTTGAATATACTC
TTTCTGGTGATGGCTATGGGAGATGTTATCATTCAACATTCATAACAAAC
ATATGTAAGAGAAGAGTTACTCCGGATGTTGAGAAGGGCATTTTTATGTG
CAATAGACCCCT Run BLAST on NCBI protein sequence of TCONS_00035251-protein >TCONS_00035251-protein ID=TCONS_00035251-protein|Name=TCONS_00035251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MADNEFEIGITSEDDYGPEYPAFSLSVKETDTIGHIKTRIEERIKVPSQH
FYVRKRGMIEVENEKTVRDYLQDGEKEYMEFVLIYIPQFLIRVCFTRSGH
VEEQTVLLTEKHRKNLGDLVTEIEKKYKLKKGELKYVHQESDSSSDETND
DVYTKWLMNLWRERKYVLNFETDANVEDKKCSVM Run BLAST on NCBI transcript from alignment at sc0001278:66697..69007- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035251 ID=TCONS_00035251|Name=TCONS_00035251|organism=Clytia hemisphaerica|type=transcript|length=2311bp|location=Sequence derived from alignment at sc0001278:66697..69007- (Clytia hemisphaerica)
AAATTAATTATATTTACCTTTTATCGTTAGCTCGTCAGTTTGTTTCCTCG
TTCTTCACGTTCGCTCGTTCATTTTTCATTACTTCAGCATGCAAATTCCC
CTAGATTTAAACTCATAAACTTATAAAATCATATGTTTTAATTTTAGCAA
ATATTATGATAGAAAAATAAAATAAGAACCTATTGAAACGAAAACGAAAA
TGGCCGATAATGAATTCGAAATTGGTATCACTTCAGGTATGCAATCATTT
ATTTTTTTTGAAAACTAAAGACCTGGTAGTTTTTAAAGGGACATAAAAGT
ACTGACGAAATTTGTAAACAAACCGTATGCAGAGGGATACAAAATCAAAA
CAAATGTCACATGTCAAAATAAAAAATCAAACCAAATATGACTGATTTTG
ATTGTTTCGATTGTATTAGAAGTTTGTTTTGGACACGTAGTTTTAATTGT
TCTCTTTAATGACACGTGGTTCGCGAAATGTTTATATTTTACTACTTTTA
TGTCCCTTTAAAAAGGGGATTTCCAGTTAGTACTTTGGAGTGGTTGAAAT
GTGGCTGTGATGCATATGGTTACCACGAAAACCTTTTTGGTAACGGTTCT
CCCTCAAGAGTTACAAAGTATTTGCTGCATAGAGAATTAAAGTTTTTAAC
CCGAATTCTCCTAAAATTATGCTAAAAGTTTGAATATTTTCCTAAATTTA
AATATTAGCCAAAATTTATGCTAATATTCCTCCTAAAATCTTGCTTTTCA
GGCTTTGGAGGCCTAAAAAAACAAAGAGATGCTAAAAAATCTTGAATAAG
CTTTTTTCATTTTTAGAAGATGATTATGGTCCCGAGTATCCGGCATTTTC
ACTATCCGTAAAAGAAACAGATACAATTGGTCACATCAAAACGAGAATTG
AAGAACGTATTAAAGTGCCGACTCAGCATTTTTATGTACGAAAACGTGGA
ATGATAGAGGTTGAAAATGAGAAAACGGTGAGGGATNTTTTGAAAAAAAA
GGTCTCTATAGCCCACTGCTACTTTAATGACACGTGGTTCGCGAAATGTT
TATATTTTACTACTTTCATGTCCCTTTAAAAAGGGGATTTCCAGTTAGTA
CTTTGGAGTGGTTGAAATGTGGCTGTGATATGTATGGTTACCACGAAAAC
CTTTTTGGTAACGGTTCTCCCTCAAGAGTTACAAAGTATTTGCTGCATAG
AGAATTAAAGTTTTTAACCCAAATTCTCCTAAAATTATGCTAAAAGTTTG
AATATTTTCCTAAATTTAAATATTAGCCAAAATTTATGCTAAAATTCCTC
CTAAAATCTTGCTTTTTAGGCTTTGGAGGCCTAAAAAAACAAAGAGATGC
TAAAAAAATCTTGAATAAGCTTTTTTCATTTTTAGAAGATGATTATGGTC
CCGAGTATCCGGCATTTTCACTATCCGTAAAAGAAACAGATACAATTGGT
CACATCAAAACGAGAATTGAAGAACGTATTAAAGTGCCGAGTCAGCATTT
TTATGTACGAAAACGTGGAATGATAGAGGTTGAAAATGAGAAAACGGTGA
GGGATTATCTCCAGGATGGGGAAAAGGAATATATGGAGTTTGTTTTGATA
TACATTCCACAATTTTTGATTCGTGTATGTTTCACACGGAGTGGTCATGT
TGAAGAACAAACTGTACTACTAACTGAAAAACATCGTAAGAATCTTGGTG
ATTTAGTCACAGAGATTGAGAAAAAATATAAACTTAAGAAAGGTGAATTG
AAATATGTTCATCAAGAGTCTGATAGTTCATCGGATGAAACAAATGATGA
CGTATATACAAAATGGTTGATGAATTTGTGGCGAGAGAGGAAATATGTTT
TGAATTTTGAAACAGACGCAAATGTCGAAGACAAGAAATGCTCGGTGATG
TGATATTTTAAAAGTGAAATGGTAGATACATCAGTTATCGTTTTGAAATA
TACTGAAGACATGAAAACACTTTTATAACCTATGAAACTATCTCAAAAAG
GCAAATAGAAACATTTGACTGTCGTCTTACAAAACGCACTTTCAAAAACA
ACATGTCGATTCTATAAAAACTCTGACAATTTGAAATGTTTTTTGATAGT
AGAGACAGCTTGTGGCATTTAATGAATCATATTGAAGCTATGACATGAAT
CATATGATGGTAAGTCTCTCATTTATTCGTCGAATTTTTGAATATACTCT
TTCTGGTGATGGCTATGGGAGATGTTATCATTCAACATTCATAACAAACA
TATGTAAGAGAAGAGTTACTCCGGATGTTGAGAAGGGCATTTTTATGTGC
AATAGACCCCT Coding sequence (CDS) from alignment at sc0001278:66697..69007- >TCONS_00035251 ID=TCONS_00035251|Name=TCONS_00035251|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0001278:66697..69007- (Clytia hemisphaerica)
AAGATGATTATGGTCCCGAGTATCCGGCATTTTCACTATCCGTAAAAGAA
ACAGATACAATTGGTCACATCAAAACGAGAATTGAAGAACGTATTAAAGT
GCCGAGTCAGCATTTTTATGTACGAAAACGTGGAATGATAGAGGTTGAAA
ATGAGAAAACGGTGAGGGATTATCTCCAGGATGGGGAAAAGGAATATATG
GAGTTTGTTTTGATATACATTCCACAATTTTTGATTCGTGTATGTTTCAC
ACGGAGTGGTCATGTTGAAGAACAAACTGTACTACTAACTGAAAAACATC
GTAAGAATCTTGGTGATTTAGTCACAGAGATTGAGAAAAAATATAAACTT
AAGAAAGGTGAATTGAAATATGTTCATCAAGAGTCTGATAGTTCATCGGA
TGAAACAAATGATGACGTATATACAAAATGGTTGATGAATTTGTGGCGAG
AGAGGAAATATGTTTTGAATTTTGAAACAGACGCAAATGTCGAAGACAAG
AAATGCTCGGTGATGTGAATGGCCGATAATGAATTCGAAATTGGTATCAC
TTCAGAAGATGATTATGGTCCCGAGTATCCGGCATTTTCACTATCCGTAA
AAGAAACAGATACAATTGGTCACATCAAAACGAGAATTGAAGAACGTATT
AAAGTGCCGAGTCAGCATTTTTATGTACGAAAACGTGGAATGATAGAGGT
TGAAAATGAGAAAACGGTGAGGGATTATCTCCAGGATGGGGAAAAGGAAT
ATATGGAGTTTGTTTTGATATACATTCCACAATTTTTGATTCGTGTATGT
TTCACACGGAGTGGTCATGTTGAAGAACAAACTGTACTACTAACTGAAAA
ACATCGTAAGAATCTTGGTGATTTAGTCACAGAGATTGAGAAAAAATATA
AACTTAAGAAAGGTGAATTGAAATATGTTCATCAAGAGTCTGATAGTTCA
TCGGATGAAACAAATGATGACGTATATACAAAATGGTTGATGAATTTGTG
GCGAGAGAGGAAATATGTTTTGAATTTTGAAACAGACGCAAATGTCGAAG
ACAAGAAATGCTCGGTGATGTGAATGGCCGATAATGAATTCGAAATTGGT
ATCACTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035251-exon-sc0001278-1575043694:68772..69007 | TCONS_00035251-exon-sc0001278-1575043694:68772..69007 | Clytia hemisphaerica | exon |
| TCONS_00035251-exon-sc0001278-1575043694:66697..67622 | TCONS_00035251-exon-sc0001278-1575043694:66697..67622 | Clytia hemisphaerica | exon |
| TCONS_00035251-exon-sc0001278-1510915933:68772..69007 | TCONS_00035251-exon-sc0001278-1510915933:68772..69007 | Clytia hemisphaerica | exon |
| TCONS_00035251-exon-sc0001278-1510915933:66697..67622 | TCONS_00035251-exon-sc0001278-1510915933:66697..67622 | Clytia hemisphaerica | exon |
| TCONS_00035251-exon-sc0001278-1491911889:68772..69007 | TCONS_00035251-exon-sc0001278-1491911889:68772..69007 | Clytia hemisphaerica | exon |
| TCONS_00035251-exon-sc0001278-1491911889:66697..67622 | TCONS_00035251-exon-sc0001278-1491911889:66697..67622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001278 | supercontig | sc0001278:66697..69007 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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