TCONS_00035247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035247
Unique NameTCONS_00035247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035247 ID=TCONS_00035247|Name=TCONS_00035247|organism=Clytia hemisphaerica|type=transcript|length=387bp
TTCAGCACATAAATAAAGATAATTGaatacaaaatttaaaaaaacaaaaa
aacaacgaaaacaTAATGAGGGGAATAAGTATATCAGAACTTGGTACAAT
TGATGTCATGAAACTTGTCACCAATCTTCCAAAACCAACACCTACTGGGA
AACAGGTGCTGATCAACGTTAAATACGCCGGTGTGAATCCCGTAGATACG
TACATCCGTAGCGGGGCATTCGGAAAAGCTACTCCGGAATTCCCTTTTAC
ACCGGGCTATGATGGATCCGGTATCGTGCACCAGATCGGTGATCAAGTTA
CCCAAATTAAGGTTGGGGACAGGGTTTGGTTTGGTGGTTGTTTGACAGGG
TCCAGCGCGGAATTTTGTCTTTGCAATGAATCTATTG
Run BLAST on NCBI

transcript from alignment at sc0001278:17119..20870-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035247 ID=TCONS_00035247|Name=TCONS_00035247|organism=Clytia hemisphaerica|type=transcript|length=3752bp|location=Sequence derived from alignment at sc0001278:17119..20870- (Clytia hemisphaerica)
TTCAGCACATAAATAAAGATAATTGAATACAAAATTTAAAAAAACAAAAA
AACAACGAAAACATAATGAGGGGAATAAGTATATCAGAACTTGGTACAAT
TGATGTCATGAAACTTGTCACCAATCTTCCAAAACCAACACCTACTGGGA
AACAGGTAGATATAAGATCTTTACATAAGATGTTTACTTTTTTTTCACCT
CCATAACACCGGCAGACTGAAGTGTATTAGGTTTTACTATTTTCAAGTCA
CAAGGCTTCAAACGTTAATAAGCACTACACAATACCTTATTTTCAAAGGA
GTGTAGACCTTAGTCCAAGCCCCTAGTGCTAAAGGGGTCTAAGTCTAGGT
CTCGCTCAAATCTAAAGAGGCCCAAGTCAATGACAAATTCAAAGGGCCTA
AGTCCATCTGTATCTTCAAATTTTAAAGTGTCTTTGTCCATCTTATTGAG
ATTGTCTTTTCTGGGGAACCCGAAATTCTCGCCCGAGCTTTTAATTCTGA
AAAACGTTAAAATATCCAAAATTGTCAAAATTTTGGCGGTGATTGTAGTG
GTTATTAGCTTCATTTATGTCATGTGGCTAAGTTTTGTGGTTGTAAGACA
ACAGCTTAGGTTGATGTTGCCATCAGAGTACTTAAAACACTACTGTTGAG
CCTTGCATAACCGCGTGTGGAAGCTTGCTTCTCAAGACAGGTGCCGCGGC
ACCGGGGGGGGAGGGACAGTCGGGCCTTGGTCCGACCACATTTTTTCCAA
GTAAAAGAAAATTTACTAATCAAGTCAAATTTGTTTAATAGCGTTGAAGC
AAACTGTTTTAGGCGACCTAGAAGGGCTAAATTCAAAAATTTTCGCCCGT
CGGCCCCAACCATGATGGTGCATATCATAACCCTATCACTTTCAAAGTGG
AGCCGCGGCCCCTGCAAGAAAGTCTTTGGAAGACTTCTGTCTACCGAGCA
TTATATCTATCCGCATTCAATGGTATTCAATGTCAATTCAATTTTAAGGA
AAACTAAAAAAAAACATTTTCTCGTCAGGTGCTGATCAACGTTAAATACG
CCGGTGTGAATCCCGTAGATACGTACATCCGTAGCGGGGCATTCGGAAAA
GCTACTCCGGAATTCCCTTTTACACCGGGCTATGATGGATCCGGTATCGT
GCACCAGATCGGTGATCAAGTTACCCAAATTAAGGTAAGAAATTTTATCC
AAAAATCTGCATTTTTTTAAGCATTACCTGTAAAGTTTTAGCACTGAAAA
ATGATTTAATATATAATTCCCCTGGTTTGTGAACCTAGAGACCTGAAAAT
GGTTTAATTGGGGACGAGATGGATTAATTTGGTTGATCGTTAACCAGTAA
TAAAACACTTGTGTTACTTTTTATAAAGAACGCGTCATTTTTATTACTTC
AAATGACCATTATTAAAGTATCTTATAAAAACTCCATCTCATCTGTTTAA
TTAGGGTTAAATTTTGCACACAACACTTGGTTACATTTCAGCTTCAAAAC
GAGGCTGAAGATTTAACTGAGATTTCACATTTATTTTTTTTCTATCCCTC
GTCTAAAGGCTTGGGGACACGAGAAGTTGTTTTGCGTTGGTGCAATGCAA
CTTGCTCCATCCCACCAACCTGAAACGACGAGAAAGCGTCTCCACCCCAT
TTTTCTCTGTACCAATAAAAGTGAATTCTCACTTTTGTCCCTGGGAGAAT
GAAGCGAAATTATTTCGAATCAGTATTGCTCCATTGTCCCAGGCACAAAA
TTAGCGTGTCTTTTGGGTATTTCCCTCACTTTTTGTCCCATGAAACAAAA
AAGAAACCATGAGACACGCACTTTTCTGTGTTGGTGGGATAGAGCATGTC
GCATTGCATCAACGCGAAAAAAACTTCTGTCCCCAAGCCTTAACCTCAGC
TATGAATTTTACCTCAGTAACATAGTTTTTTACTTATAATGGTCTACACT
CGAAAATGGGGGGCGTACGGTTTCACGGTATCTGGGATAAGGCTTTTTTA
AACACGGGATAACGGTATTTGTGAAAAAAAACTACGGGATGACGGGATTT
CAGATGACCCACGGTGACGGTATTTGTCAGATTTCAATCTCGGGATACGG
TATTTTGATTAAAAATCTATGGTATTTCGGTGAAAATCATAGAAGAACGG
TACAGCCGGTACGAAATTCTCACCACAACCAGAGAGTTAAAGTGTAAACA
GGGCTTTAAATATTCGAATACTTGTTTGACAATGTTCTTTATATTGTGGA
CTACAAACGTCTTGTATAAAGATAGCATCAACAATAGTCCACACAGCAAC
GTTTTTGGAGGCAATTGGCAAATTGTTGAGAGCATTCTCTTTTCATGAGA
AGAAATGTATAACGTGTTTGTTTGTGCCATCTTAAACCTCCTCTTTTAAA
TCTTCAGTGTGAACTACCCTATTAGAAAGGGGGAGGGGTAAAGCTTTCCC
AAAAATGTAACCCAGCTGGCACATAACGTTGTTTCAACCCGGGGAGGGGG
GCACTCCAGGTAAGTGACCTATACCGGACGTGCGGCCCTTAAGAGTAGGT
TTTTTGGACTTTGGAATTAAGTGCACTGCAAGAGTTGATTTGTGAGCAAG
TGGGAAAAAGTGCACTCTAAGGGTGTAAAATTTGAGAAAATATCAAATTT
TGAGGTAAAATTTGAGAAATTTTCCGGCACTGTAAGGGTCCGATTTTATA
GACCTGATTTTTGGCCGAATGTACGATCGTTTTCAAAATCGAGTGCCCCC
CCGGGTGTTTCAACGTCCATCTAACGTTCATAACGTTCATATATAACGTT
AGACAAACGTAGAAACAACGTTGTGTGCCAGCTGGGAAGGTATAAATAAT
AAGGCAAGGTAGATCGGCGTAACGGATTGACCCATTGAAGGGGGAGCAAC
CCTTCTGTTACTATGATTTACCTTTCTTGGTTTTACGAAAATTCTTCACG
GGATCGGTATTTTCGGAAAAAAACCACGGGATGACGGGATTTCCGCGAAA
AATTTACGGGATGACGGGATTCCAGATTGCCGTACGCCCCCCACTCGAAA
ATATTTGAAAATAATTCTTGCAGGAAGGTGACCGAGTGTGGTTTGTGAAA
TGTCTGACAGGATCAAGTGCAGAATATTGTCTTTGTAACGAAGAAGCCGT
GGGTGGACTACCTGAGCCAAGTTCCTTTGAAGTGGGTGCTATGATTGGAA
CGCCCTATATGACTGCATATAGAGCCATCTTTCAAAAGTACGACATTATT
CGTTGTGAGTGTGGGTTATTGAGGGAAACTGGCCTATCTTGTATACATTA
CATCTGGTATTGAAACCAGTAGGATATTTGAGGATGGTTTTCATTAAAGA
TTTTCTTTTCATGATATAAAAAAGTGGCGCCCCTCTTTGCTGACAAAGCC
GAAAAAGCAATAGAATTTCTAAACATATGCGCTCGCATGGCGCGGGAGGG
AGAAAAAGTTGTTCTTTCTTTTATTTAAAAATGCTGTTCAAGCAAATGGT
AGGAGATACCTTAAATGATGTCCTTTAAGACCTCTGTTATGAATAAAATG
ACAGATTCATCTTACTGGGAGAAGCTACTAGTGTGTACTCAAGATATCTA
TTATTCGTCATAACCCTCACCTCAACAAAATATTTTTTACTTATCGATCT
TCTTATAGTTTTAACATTGACTTTAGGTTGGGGACAGGGTTTGGTTTGGT
GGTTGTTTGACAGGGTCCAGCGCGGAATTTTGTCTTTGCAATGAATCTAT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020567XLOC_020567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035247-exon-sc0001278-1575043694:20716..20870TCONS_00035247-exon-sc0001278-1575043694:20716..20870Clytia hemisphaericaexon
TCONS_00035247-exon-sc0001278-1575043694:19687..19842TCONS_00035247-exon-sc0001278-1575043694:19687..19842Clytia hemisphaericaexon
TCONS_00035247-exon-sc0001278-1575043694:17119..17194TCONS_00035247-exon-sc0001278-1575043694:17119..17194Clytia hemisphaericaexon
TCONS_00035247-exon-sc0001278-1510915933:20716..20870TCONS_00035247-exon-sc0001278-1510915933:20716..20870Clytia hemisphaericaexon
TCONS_00035247-exon-sc0001278-1510915933:19687..19842TCONS_00035247-exon-sc0001278-1510915933:19687..19842Clytia hemisphaericaexon
TCONS_00035247-exon-sc0001278-1510915933:17119..17194TCONS_00035247-exon-sc0001278-1510915933:17119..17194Clytia hemisphaericaexon
TCONS_00035247-exon-sc0001278-1491911889:20716..20870TCONS_00035247-exon-sc0001278-1491911889:20716..20870Clytia hemisphaericaexon
TCONS_00035247-exon-sc0001278-1491911889:19687..19842TCONS_00035247-exon-sc0001278-1491911889:19687..19842Clytia hemisphaericaexon
TCONS_00035247-exon-sc0001278-1491911889:17119..17194TCONS_00035247-exon-sc0001278-1491911889:17119..17194Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001278supercontigsc0001278:17119..20870 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35782	0	0	1.02837	0	0.50097	4.63126	2.62877	0.905625	5.31148	0.000114516	4.22932	2.96623	2.03806	0	0	2.49178	0	0	0.602844	1.31577	0	0	0.0158096	1.04717	0	0	1.06935	0	0
Blast
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BLAST of TCONS_00035247 vs. Swiss-Prot (Human)
Match: QOR (Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.371e-23
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 3 
Query:   66 MRGISISELGTIDVMKLVTNLPKPTPTGKQVLINVKYAGVNPVDTYIRSGAFGKATPEFPFTPGYDGSGIVHQIGDQVTQIKVGDRVWFGGCLTGSSAEFCLCNE 380
            MR + + E G  +V+KL +++  P P   QVLI V   GVNPV+TYIRSG + +  P  P+TPG D +G++  +GD  +  K GDRV+    ++G  AE+ L  +
Sbjct:    8 MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR-KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAAD 111
The following BLAST results are available for this feature:
BLAST of TCONS_00035247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QOR3.371e-2340.95Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=... [more]
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