TCONS_00035244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035244
Unique NameTCONS_00035244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035244 ID=TCONS_00035244|Name=TCONS_00035244|organism=Clytia hemisphaerica|type=transcript|length=311bp
TAGCATTATGACTTCAACAAAATCAGACAAAATAAACTCTAACCCAGTGT
CTTGGCTTAGTAGAGGTGCAAAAGTGGAGTGTAGAAAATTTAATATAATA
AATACAATaatatcaaaattacaaaaatactgaCTCAAAGTATTTCACAA
AGTGATACAATAAACTCTAACCCAGTCTATTGGCTTGGTAGAGGTGCAAA
AGTGGAGTGGAGAAATTTttaatacaataaaaacaataatatcaaaatta
caaaaatactgattcaaaatatattataaaagtGATACAATAAACTCTAA
CCCAGTCTNTT
Run BLAST on NCBI

transcript from alignment at sc0001278:69248..69839+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035244 ID=TCONS_00035244|Name=TCONS_00035244|organism=Clytia hemisphaerica|type=transcript|length=592bp|location=Sequence derived from alignment at sc0001278:69248..69839+ (Clytia hemisphaerica)
TAGCATTATGACTTCAACAAAATCAGACAAAATAAACTCTAACCCAGTGT
CTTGGCTTAGTAGAGGTGCAAAAGTGGAGTGTAGAAAATTTAATATAATA
AATACAATaatatcaaaattacaaaaatactgaCTCAAAGTATTTCACAA
AGTGATACAATAAACTCTAACCCAGTCTATTGGCTTGGTAGAGGTGCAAC
AGTggagtgaagaaatttttaatacaataaaaacaataatatccaaatta
caaaattactgattcaaaatatattataaaagtGATACAATAAACTCTAA
CCCAGTCTCTTGGCTTGGTAGAGGTGCAACAGTGGAGTGGAGAAATTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
ACAAAAATACtgattcaaaatatattataaaagtGATACAATAAACTCTA
ACCCAGTCTCTTGGCTTGGTAGAGGTGCAAAAGTGGAGTGGAGAAATTTt
taatacaataaaaacaataatatcaaaattacaaaaatactgattcaaaa
tatattataaaagtGATACAATAAACTCTAACCCAGTCTNTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020566XLOC_020566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035244-exon-sc0001278-1491911889:69248..69440TCONS_00035244-exon-sc0001278-1491911889:69248..69440Clytia hemisphaericaexon
TCONS_00035244-exon-sc0001278-1510915933:69248..69440TCONS_00035244-exon-sc0001278-1510915933:69248..69440Clytia hemisphaericaexon
TCONS_00035244-exon-sc0001278-1575043694:69248..69440TCONS_00035244-exon-sc0001278-1575043694:69248..69440Clytia hemisphaericaexon
TCONS_00035244-exon-sc0001278-1491911889:69722..69839TCONS_00035244-exon-sc0001278-1491911889:69722..69839Clytia hemisphaericaexon
TCONS_00035244-exon-sc0001278-1510915933:69722..69839TCONS_00035244-exon-sc0001278-1510915933:69722..69839Clytia hemisphaericaexon
TCONS_00035244-exon-sc0001278-1575043694:69722..69839TCONS_00035244-exon-sc0001278-1575043694:69722..69839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001278supercontigsc0001278:69248..69839 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.46771	0	0	0.658413	2.76137	6.15983	5.23351	0	2.88904	2.15885	3.46261	2.53926	5.04524	4.30058	2.96367	6.05645	9.79908	3.90197	8.56705	10.7903	6.86929	9.43455	4.07998	5.7708	10.6911	2.07814	0	4.24382	5.0361
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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