TCONS_00035240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035240
Unique NameTCONS_00035240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035240 ID=TCONS_00035240|Name=TCONS_00035240|organism=Clytia hemisphaerica|type=transcript|length=303bp
TTTATTCAGACAAACACATTATTCATAGCAGTGTTCAAGATTAAGCATGG
TTTGGGTGGTCAAGCTGAGTGATGGACACATATTAGATGTATGTTCGTCC
GGCGCCTCATAGGATAGCCTCTCCTCAGAAGTCAACCCTCTCCCTCCACG
CGGTGTCCACCTGGTTAAAACAAATCGAGGGCTCTGGCGACAGGTCAAGT
ATTCGGCGTCCTGTATAAATAACTAATAGTTTACTTGCTGGCTTATTCGG
TTTTACTGTGAGGTTTGACTGAAGTGAGAGTCTGCTGATTTAGTATCGGG
GTG
Run BLAST on NCBI

transcript from alignment at sc0001277:43046..43348

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035240 ID=TCONS_00035240|Name=TCONS_00035240|organism=Clytia hemisphaerica|type=transcript|length=303bp|location=Sequence derived from alignment at sc0001277:43046..43348 (Clytia hemisphaerica)
CACCCCGATACTAAATCAGCAGACTCTCACTTCAGTCAAACCTCACAGTA
AAACCGAATAAGCCAGCAAGTAAACTATTAGTTATTTATACAGGACGCCG
AATACTTGACCTGTCGCCAGAGCCCTCGATTTGTTTTAACCAGGTGGACA
CCGCGTGGAGGGAGAGGGTTGACTTCTGAGGAGAGGCTATCCTATGAGGC
GCCGGACGAACATACATCTAATATGTGTCCATCACTCAGCTTGACCACCC
AAACCATGCTTAATCTTGAACACTGCTATGAATAATGTGTTTGTCTGAAT
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020563XLOC_020563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035240-exon-sc0001277-1491911889:43046..43348TCONS_00035240-exon-sc0001277-1491911889:43046..43348Clytia hemisphaericaexon
TCONS_00035240-exon-sc0001277-1510915933:43046..43348TCONS_00035240-exon-sc0001277-1510915933:43046..43348Clytia hemisphaericaexon
TCONS_00035240-exon-sc0001277-1575043694:43046..43348TCONS_00035240-exon-sc0001277-1575043694:43046..43348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001277supercontigsc0001277:43046..43348 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67733	0.735365	0.426915	0.606369	0	0.401801	0.969513	2.72294	1.82986	0	0	0	0.250764	0	0	0	0	0.454363	0	0	0	0	0.432317	0	0	2.52905	0	0.551766	0	0.426381
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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