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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035236 ID=TCONS_00035236|Name=TCONS_00035236|organism=Clytia hemisphaerica|type=transcript|length=1387bp
TacgaattgaaatcattgcctGAGGCTATTGGTATGGTATCAGAATCCCT
ATCTTCCGTCTCATCGTTTGAGAAAGATATACGCAAGACGGAAacaaacc
ttccagtttcgttaacCGGAGCTCATGGTTTCGTCTCGACAAAGTCATTT
GTTTCACTTCAGTTAACGAAATGGTCACTGGAGAAGTTGTCTGAAACTTG
TTCTTCATTCAAGTACAACCAGACGAATATGCTAAGCATGATGACGCTCT
CTGTGGAACATTTTCATTCTACCACACATACAAAACAAGTTCTAATGAGT
CAACTTCAATACGCCCGGGAATTCATGACGTCGGTAAAAGAGTCATTGAA
AAGGCTTGGCTCCTTGGTCGGTTCACTATTTTACCTCAAGAAAAGGGAGC
TGGTACCCGGCCACCGAAAGTTCAATCGATTTTAACGAACTTTCTGGTGT
GCTACCCAAGAAACATATCGCTGTCCAAATCCCCAAAAATGAAGAGGAAA
AGCTTAGAGTTTGGGCTGATAGTTACACACGTGCCGTCCGCCAGCGCAGT
GTTCGCCAGGAAACAACTATGGCAAAGTGTGGAACACTCCCAACATATTT
ATATACGGATAAAGTAGACGAAATTGCTCAAGCTACTGATCCATACAACT
ACAAACACCCAAGGAAAAGCAAAGATGCTGCAGACATACAAATGAATTCA
ATCGCCCCAAATTTACAAACGAATTCAATCGCGGCTGACCTACAAACCAA
TTCACTCGCCGTAGACGTACAAACCAATTCACTCGTCGCAGACGTACAAA
CCAATTCACTCGTCGCAGACGTACAAACCAATTCACTCGCAGCAAACGTA
CAAACCAATTCACTCGCCACAGACGTACAGACAAACTCGATCGCCACAGA
CGAACAAACGATTATTGCCGAAGAGGAGCAGCCAGATTCGTTCGATCCTG
ATAGTGGTGATGAACAGACAGCTGAATCATCAACTTTAGGTGGCTTGGAC
GAGGcaacatttttcatggttggTCGATCAACCAGATTTGGACGTAAAAT
TAAAGTTAACTCAAAATTTATCTCTTAATGCCTTAATCATTCACAAGact
tttttatgacttttctaGTGTTTTTAGTTAACGATTTGAAACCTTTTATG
AAATTAGCGTACAGTACTTAGCGCCTGTCTAGATGGAGATTCAGTACAGA
GCGAACAACCCACTTTTATAACCTCGTACGCCTAACGGGTTTCAGGATAT
CCCCTGATGCTGTAGTgagattttgtaaatttgattgAAAGCTTCAGTAC
GCCAGGTACCGAAACTCAATGTAAACGGACTGTTAaccagttttttattt
tttaatagaatTTGACCTCGCTCAAAACTAGAATTTT Run BLAST on NCBI protein sequence of TCONS_00035236-protein >TCONS_00035236-protein ID=TCONS_00035236-protein|Name=TCONS_00035236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MAKCGTLPTYLYTDKVDEIAQATDPYNYKHPRKSKDAADIQMNSIAPNLQ
TNSIAADLQTNSLAVDVQTNSLVADVQTNSLVADVQTNSLAANVQTNSLA
TDVQTNSIATDEQTIIAEEEQPDSFDPDSGDEQTAESSTLGGLDEATFFM
VGRSTRFGRKIKVNSKFIS Run BLAST on NCBI transcript from alignment at sc0001277:28231..29617 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035236 ID=TCONS_00035236|Name=TCONS_00035236|organism=Clytia hemisphaerica|type=transcript|length=1387bp|location=Sequence derived from alignment at sc0001277:28231..29617 (Clytia hemisphaerica)
AAAATTCTAGTTTTGAGCGAGGTCAAattctattaaaaaataaaaaactg
gtTAACAGTCCGTTTACATTGAGTTTCGGTACCTGGCGTACTGAAGCTTT
caatcaaatttacaaaatctcACTACAGCATCAGGGGATATCCTGAAACC
CGTTAGGCGTACGAGGTTATAAAAGTGGGTTGTTCGCTCTGTACTGAATC
TCCATCTAGACAGGCGCTAAGTACTGTACGCTAATTTCATAAAAGGTTTC
AAATCGTTAACTAAAAACACtagaaaagtcataaaaaagtCTTGTGAATG
ATTAAGGCATTAAGAGATAAATTTTGAGTTAACTTTAATTTTACGTCCAA
ATCTGGTTGATCGAccaaccatgaaaaatgttgCCTCGTCCAAGCCACCT
AAAGTTGATGATTCAGCTGTCTGTTCATCACCACTATCAGGATCGAACGA
ATCTGGCTGCTCCTCTTCGGCAATAATCGTTTGTTCGTCTGTGGCGATCG
AGTTTGTCTGTACGTCTGTGGCGAGTGAATTGGTTTGTACGTTTGCTGCG
AGTGAATTGGTTTGTACGTCTGCGACGAGTGAATTGGTTTGTACGTCTGC
GACGAGTGAATTGGTTTGTACGTCTACGGCGAGTGAATTGGTTTGTAGGT
CAGCCGCGATTGAATTCGTTTGTAAATTTGGGGCGATTGAATTCATTTGT
ATGTCTGCAGCATCTTTGCTTTTCCTTGGGTGTTTGTAGTTGTATGGATC
AGTAGCTTGAGCAATTTCGTCTACTTTATCCGTATATAAATATGTTGGGA
GTGTTCCACACTTTGCCATAGTTGTTTCCTGGCGAACACTGCGCTGGCGG
ACGGCACGTGTGTAACTATCAGCCCAAACTCTAAGCTTTTCCTCTTCATT
TTTGGGGATTTGGACAGCGATATGTTTCTTGGGTAGCACACCAGAAAGTT
CGTTAAAATCGATTGAACTTTCGGTGGCCGGGTACCAGCTCCCTTTTCTT
GAGGTAAAATAGTGAACCGACCAAGGAGCCAAGCCTTTTCAATGACTCTT
TTACCGACGTCATGAATTCCCGGGCGTATTGAAGTTGACTCATTAGAACT
TGTTTTGTATGTGTGGTAGAATGAAAATGTTCCACAGAGAGCGTCATCAT
GCTTAGCATATTCGTCTGGTTGTACTTGAATGAAGAACAAGTTTCAGACA
ACTTCTCCAGTGACCATTTCGTTAACTGAAGTGAAACAAATGACTTTGTC
GAGACGAAACCATGAGCTCCGgttaacgaaactggaaggtttgtTTCCGT
CTTGCGTATATCTTTCTCAAACGATGAGACGGAAGATAGGGATTCTGATA
CCATACCAATAGCCTCaggcaatgatttcaattcgtA Coding sequence (CDS) from alignment at sc0001277:28231..29617 >TCONS_00035236 ID=TCONS_00035236|Name=TCONS_00035236|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0001277:28231..29617 (Clytia hemisphaerica)
TTAAGAGATAAATTTTGAGTTAACTTTAATTTTACGTCCAAATCTGGTTG
ATCGAccaaccatgaaaaatgttgCCTCGTCCAAGCCACCTAAAGTTGAT
GATTCAGCTGTCTGTTCATCACCACTATCAGGATCGAACGAATCTGGCTG
CTCCTCTTCGGCAATAATCGTTTGTTCGTCTGTGGCGATCGAGTTTGTCT
GTACGTCTGTGGCGAGTGAATTGGTTTGTACGTTTGCTGCGAGTGAATTG
GTTTGTACGTCTGCGACGAGTGAATTGGTTTGTACGTCTGCGACGAGTGA
ATTGGTTTGTACGTCTACGGCGAGTGAATTGGTTTGTAGGTCAGCCGCGA
TTGAATTCGTTTGTAAATTTGGGGCGATTGAATTCATTTGTATGTCTGCA
GCATCTTTGCTTTTCCTTGGGTGTTTGTAGTTGTATGGATCAGTAGCTTG
AGCAATTTCGTCTACTTTATCCGTATATAAATATGTTGGGAGTGTTCCAC
ACTTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035236-exon-sc0001277-1491911889:28231..29617 | TCONS_00035236-exon-sc0001277-1491911889:28231..29617 | Clytia hemisphaerica | exon |
| TCONS_00035236-exon-sc0001277-1510915933:28231..29617 | TCONS_00035236-exon-sc0001277-1510915933:28231..29617 | Clytia hemisphaerica | exon |
| TCONS_00035236-exon-sc0001277-1575043694:28231..29617 | TCONS_00035236-exon-sc0001277-1575043694:28231..29617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001277 | supercontig | sc0001277:28231..29617 . |
Blast
The following BLAST results are available for this feature:
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