TCONS_00035234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035234
Unique NameTCONS_00035234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length846

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035234 ID=TCONS_00035234|Name=TCONS_00035234|organism=Clytia hemisphaerica|type=transcript|length=846bp
GATTTACAAGTGTGAAGCTAAATCTATCGAGGAATGCTTGAAAGAAATTA
GTTCGTCAAAAAAAGGTTGGTATCATAGCTTTGAATGGGCTTTGAAtagt
tttgattgttttaagttgtatatttatttttagtttatttgtTTTATATC
AACAAACATATCAATCAAAAATATACTCAATATGGTTGGTTTGATGGGTT
TGATTCCTACTAGCATGTTCGTCTTCATCCAAAATATTGTCAAGCAGTCT
GGATTAAGAGCACCATGAACGCTTGCGCAGAGTCAACCCAACGCTGCCCA
AGAGGGCTGGATGAATTGACAGATCGTAGTCAAGTATTCAAACCTTCCAA
TATCAACAACAGACCCTGCCACCCTTTCAAAATCATACCAGCTGTCCAAA
GAACAATAAACACTATCTTCAACTTATCAATGATTTTCAGAATCCAGATG
GCACATGTAAGGATAGACCAGGAAAATCGCAGCATGGACATAAGATGAAA
AGTTATGCTGAACTTGACAACACAGAATtataaaattttggaaatgtata
tttctaaattttaatagTCCCTTTTCTGAAAGTGAAAGAAATGACTTGGG
AggtaatttattcaaaaaacaaacaatgtgTCTGTCTCCTATTAGGAAAG
CATTAGTCAACAAGAGGTGAACAAGCAAATGCCTGGTAATATGATGTAGT
TTTGGCCTGAAAAATCACATAACAAAAATCATTGCCtttgataaaagtta
aaaaatagaCATACAAATAGCATTTCATATTCTGACCAAAAGATGTGTTt
cacaaaagtttcaaaactttgatgATGTGAGCAAAAATGAATGAAT
Run BLAST on NCBI

transcript from alignment at sc0001277:22645..23490

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035234 ID=TCONS_00035234|Name=TCONS_00035234|organism=Clytia hemisphaerica|type=transcript|length=846bp|location=Sequence derived from alignment at sc0001277:22645..23490 (Clytia hemisphaerica)
ATTCATTCATTTTTGCTCACATcatcaaagttttgaaacttttgtgaAAC
ACATCTTTTGGTCAGAATATGAAATGCTATTTGTATGtctattttttaac
ttttatcaaaGGCAATGATTTTTGTTATGTGATTTTTCAGGCCAAAACTA
CATCATATTACCAGGCATTTGCTTGTTCACCTCTTGTTGACTAATGCTTT
CCTAATAGGAGACAGAcacattgtttgttttttgaataaattaccTCCCA
AGTCATTTCTTTCACTTTCAGAAAAGGGActattaaaatttagaaatata
catttccaaaattttataATTCTGTGTTGTCAAGTTCAGCATAACTTTTC
ATCTTATGTCCATGCTGCGATTTTCCTGGTCTATCCTTACATGTGCCATC
TGGATTCTGAAAATCATTGATAAGTTGAAGATAGTGTTTATTGTTCTTTG
GACAGCTGGTATGATTTTGAAAGGGTGGCAGGGTCTGTTGTTGATATTGG
AAGGTTTGAATACTTGACTACGATCTGTCAATTCATCCAGCCCTCTTGGG
CAGCGTTGGGTTGACTCTGCGCAAGCGTTCATGGTGCTCTTAATCCAGAC
TGCTTGACAATATTTTGGATGAAGACGAACATGCTAGTAGGAATCAAACC
CATCAAACCAACCATATTGAGTATATTTTTGATTGATATGTTTGTTGATA
TAAAacaaataaactaaaaataaatatacaacttaaaacaatcaaaacta
TTCAAAGCCCATTCAAAGCTATGATACCAACCTTTTTTTGACGAACTAAT
TTCTTTCAAGCATTCCTCGATAGATTTAGCTTCACACTTGTAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020557XLOC_020557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035234-exon-sc0001277-1491911889:22645..23490TCONS_00035234-exon-sc0001277-1491911889:22645..23490Clytia hemisphaericaexon
TCONS_00035234-exon-sc0001277-1510915933:22645..23490TCONS_00035234-exon-sc0001277-1510915933:22645..23490Clytia hemisphaericaexon
TCONS_00035234-exon-sc0001277-1575043694:22645..23490TCONS_00035234-exon-sc0001277-1575043694:22645..23490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001277supercontigsc0001277:22645..23490 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07696	2.17219	0.659173	0.640025	0.243167	0.0608557	0.286419	0.281073	0.216783	0.193175	0.344693	0.154925	0	0	0.0316255	0.212029	0.134042	0.135429	0.296025	0.207382	0.339769	0.184637	1.90775	0.968361	0.119595	0.320206	6.65799	1.6656	0.396932	0.741426
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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