TCONS_00035233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035233
Unique NameTCONS_00035233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035233 ID=TCONS_00035233|Name=TCONS_00035233|organism=Clytia hemisphaerica|type=transcript|length=811bp
GCAATTAACATGTAAACCAATATTTCCTCCTGTCCATCTGGACAGGAAAA
TTGTATTAATAGCAAGAAATATACAACTCTGCTAGCTGTTCTCCTTCTTT
CAAGTACCAGAAAGAGGGTTTTGAAATTCAGCACATACTACAAACGTTTT
TTTGTCTTATCTACTAGCCACACTTTTCCATGAAAAGTTCTGTTCCAAAA
TACCACGAGATTTCTCAATAAGTAATGACCACTTCTCTCCACAGTTTCAT
AGTTTGTTAAACTTTTCCCAGACCATTCATTCCATAGACTCCAAAAGCAG
CCAGCTTTCCCAGTTAATTACTACCATCTCTGCAAAACTCTCTGTTTATT
CTGGTTTATTACATCTCTCCTCGATAACTTCTGTTCCAAAATACCACTGG
AACTGTCAATTTAAAATGAACACAGATTTCTCAATGAGTTTTCACTTCTT
TCCTCAATAGCTGCATGATTTACCCCACCTCTCCTAAAAAATTCAACCAC
CAATAAAAACCACTTGTCTTATCCAAATTTCAAAGAATTAAAACAAGTTT
CTTGACAGTTCCACAGTGTGCCACAGGTTCACACATGTCTAACATCAGCT
CTTTGTCTAAATACTATTGTCAATAAATCATGACCACTTCTCTCCACAGT
TCCATGGCTTGCCATGCCAAGCCTACTAGAAAATTCGCTCTCAAAATACC
ATCAAATTCCACCACTTTCCAATTAATTATTACCACGCTCTCCAAAGCTC
TCTGCTTGTTGTACCTCTCCTAAGAGATTTCATTGCCACTGTATTCCCAC
TTCTCTCCACA
Run BLAST on NCBI

transcript from alignment at sc0001277:21714..22524

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035233 ID=TCONS_00035233|Name=TCONS_00035233|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0001277:21714..22524 (Clytia hemisphaerica)
TGTGGAGAGAAGTGGGAATACAGTGGCAATGAAATCTCTTAGGAGAGGTA
CAACAAGCAGAGAGCTTTGGAGAGCGTGGTAATAATTAATTGGAAAGTGG
TGGAATTTGATGGTATTTTGAGAGCGAATTTTCTAGTAGGCTTGGCATGG
CAAGCCATGGAACTGTGGAGAGAAGTGGTCATGATTTATTGACAATAGTA
TTTAGACAAAGAGCTGATGTTAGACATGTGTGAACCTGTGGCACACTGTG
GAACTGTCAAGAAACTTGTTTTAATTCTTTGAAATTTGGATAAGACAAGT
GGTTTTTATTGGTGGTTGAATTTTTTAGGAGAGGTGGGGTAAATCATGCA
GCTATTGAGGAAAGAAGTGAAAACTCATTGAGAAATCTGTGTTCATTTTA
AATTGACAGTTCCAGTGGTATTTTGGAACAGAAGTTATCGAGGAGAGATG
TAATAAACCAGAATAAACAGAGAGTTTTGCAGAGATGGTAGTAATTAACT
GGGAAAGCTGGCTGCTTTTGGAGTCTATGGAATGAATGGTCTGGGAAAAG
TTTAACAAACTATGAAACTGTGGAGAGAAGTGGTCATTACTTATTGAGAA
ATCTCGTGGTATTTTGGAACAGAACTTTTCATGGAAAAGTGTGGCTAGTA
GATAAGACAAAAAAACGTTTGTAGTATGTGCTGAATTTCAAAACCCTCTT
TCTGGTACTTGAAAGAAGGAGAACAGCTAGCAGAGTTGTATATTTCTTGC
TATTAATACAATTTTCCTGTCCAGATGGACAGGAGGAAATATTGGTTTAC
ATGTTAATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020556XLOC_020556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035233-exon-sc0001277-1491911889:21714..22524TCONS_00035233-exon-sc0001277-1491911889:21714..22524Clytia hemisphaericaexon
TCONS_00035233-exon-sc0001277-1510915933:21714..22524TCONS_00035233-exon-sc0001277-1510915933:21714..22524Clytia hemisphaericaexon
TCONS_00035233-exon-sc0001277-1575043694:21714..22524TCONS_00035233-exon-sc0001277-1575043694:21714..22524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001277supercontigsc0001277:21714..22524 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731616	0.448297	0.0734795	0	0	0	0.0991348	0.229296	0.106854	0.285209	0.335018	0.0431315	0.0931009	0.540994	0.0812824	0.0984349	0.182776	0.099692	0	0.131112	0.24949	0.353832	0	0.184097	0.178011	0.0629625	2.22973	1.70108	0.0745972	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top