TCONS_00035232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035232
Unique NameTCONS_00035232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035232 ID=TCONS_00035232|Name=TCONS_00035232|organism=Clytia hemisphaerica|type=transcript|length=442bp
TCactgcaaatctcagtgaatGCTCACATCTTTCAACAGGTCAAGGTTTG
TCACATCATTCTTCGATAAGTTCATCCCAAATTTACCAACAATTTGGTCA
CCACAACTCTCCACTTCTTTCAACATTTCACGGTTTGCACCACCTCTCCT
CAaaagttcattttcaaaattcattcagAATTTCTTAATGTGATATTACC
ACACTCATTCCTAAATTTTAACGTTCTCAGGATAGATTCCAACGCTTATA
TCAAGCAAGAAATGGTGAAAAGCCATCCATGGCTCAACCGTCGATTCAGC
CAAGAGTATAATGCCTGCCAAGACATGATCAACTGGCTAAGAAAGATGAG
AAGGAGCTAAGGACGGATGTTTCGTTGATTACGCATCACATCCCTCTGTC
AGCATGAAGGAATTGTCCGACGATGAAACTTTTCTGAAAAAC
Run BLAST on NCBI

transcript from alignment at sc0001277:19369..19810

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035232 ID=TCONS_00035232|Name=TCONS_00035232|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at sc0001277:19369..19810 (Clytia hemisphaerica)
GTTTTTCAGAAAAGTTTCATCGTCGGACAATTCCTTCATGCTGACAGAGG
GATGTGATGCGTAATCAACGAAACATCCGTCCTTAGCTCCTTCTCATCTT
TCTTAGCCAGTTGATCATGTCTTGGCAGGCATTATACTCTTGGCTGAATC
GACGGTTGAGCCATGGATGGCTTTTCACCATTTCTTGCTTGATATAAGCG
TTGGAATCTATCCTGAGAACGTTAAAATTTAGGAATGAGTGTGGTAATAT
CACATTAAGAAATTctgaatgaattttgaaaatgaactttTGAGGAGAGG
TGGTGCAAACCGTGAAATGTTGAAAGAAGTGGAGAGTTGTGGTGACCAAA
TTGTTGGTAAATTTGGGATGAACTTATCGAAGAATGATGTGACAAACCTT
GACCTGTTGAAAGATGTGAGCattcactgagatttgcagtGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020555XLOC_020555Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035232-exon-sc0001277-1491911889:19369..19810TCONS_00035232-exon-sc0001277-1491911889:19369..19810Clytia hemisphaericaexon
TCONS_00035232-exon-sc0001277-1510915933:19369..19810TCONS_00035232-exon-sc0001277-1510915933:19369..19810Clytia hemisphaericaexon
TCONS_00035232-exon-sc0001277-1575043694:19369..19810TCONS_00035232-exon-sc0001277-1575043694:19369..19810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001277supercontigsc0001277:19369..19810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.63233	1.50387	0.593877	0.168669	0.318937	0.486782	0.783043	0.399082	0.555169	0	0.462795	0.1087	0.266474	0.301983	0.328184	0.155743	0.114305	0	0.543116	0.301088	0.321907	0.517609	0.714911	0.405527	0	0	1.65376	0	0.507007	0.361278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top