TCONS_00035231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035231
Unique NameTCONS_00035231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035231 ID=TCONS_00035231|Name=TCONS_00035231|organism=Clytia hemisphaerica|type=transcript|length=585bp
GCTGTTGTTATCGTTCAAGATTTGCTGCAGAAAGTTTGGTTTTGAGGTTG
TAAAAAGAGTTCTTCAAAGCGAAAGAACTCTGGAAACCTCACTTCGTGCT
CACAACTGGACAGCTTGTTCACACTATGTGTGAGATATAAACTGGAGCTT
CAAGCTAAATTTCACTTGGCGACTTGATACGAAACCAGCTGGCAAACACC
ATTANACCTCACTTCGTGCTCACAACTGGACAGCTTGTTCACACTATGTG
TGAGATATAAACTGGAGCTTCAAGCTAAAATTCACTTGGCGACTTGATAC
GAAACCAGCTGGCAAACACCATTATTTCAACGTCGATCCTGCGTAAAGAG
TCAATTCTCAAAGTACAAATTTTCATTCTATATGGAatgtgtggtaaaac
atttgtAGATCTTCGCCCCAACAAATTATCATGTTCTTGCCTCGACAATT
TTCtcctacaaaaccttagaattACAATGTACATTTTCAGAGGCTTGAAA
AGCGTATTGATAGCTTTAGGGTTCCAATTAATTACTACATATCTcattat
acacccctgtctcatacagtcccggtggaactttt
Run BLAST on NCBI

transcript from alignment at sc0001277:44873..46853-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035231 ID=TCONS_00035231|Name=TCONS_00035231|organism=Clytia hemisphaerica|type=transcript|length=1981bp|location=Sequence derived from alignment at sc0001277:44873..46853- (Clytia hemisphaerica)
GCTGTTGTTATCGTTCAAGATTTGCTGCAGAAAGTTTGGTTTTGAGGTAC
CTTTTATTTTACAATTTTCTTCTGGCTTAAGGTTTAAAATCTCCCCTTCT
AAATATAGCTGTAGGCAAAAATTTAGAGACAACTTTCTGCCTTTGTGGTT
TTTTATTCCGGCTGAAAGCGTGGGGTAAATCATCAAAGAATTGACGCACT
AGATCCGGAAATATAGTATTGTATTGGAATTAGAATTTATGTCTCATTCA
TCTTAAAAACTTTACCAGGACGTTGGCAACACGCATATCTCAAAGAGAAC
TCTACTAGAAAAGGATTTATTCAGCTAATGACACCTAAAGCGGGCNCGTA
TTGGAATTAGAAATTATGTCTCATTCATCTTAAAAACTTTATCAAGACGT
TGGCAACATGCATATCTCAAAGAGAACTCTACTAGAAAAGGATTTATTCA
GCTAATGACACCTGAAGCGGGCTGTAAACATATTTTCAAATATTAATTTA
GAAGGTGATTCCTTGTAACCAATTTTTCAGTTTAACAAATTTGTATTTTT
TTAGCCATCTATTATTAATATTTACAATATATTTGACCACAAAGACTTAA
TTTTCACCGGAACATCTCTATTCGTATTTCTAAGCAGGGTCGGATACAGG
AGGTAGGCTATCTTATTCATGGAGAGTAATTTATTTTCCATATGAATTAA
TACGATAATAAAGTGCACTCTCCTCCATTGGTTATAGCCTCCCTCTGTAT
CCGAGCCTGCTAAGGGAAGCACGTTTCACGTCTTTGAAATTTATCTTGGA
AGATTAGGTCTCGGATCATTCATAAACTCTTTCAGTCCTTCATTTTCATG
TTTTTGACAAATCTTATTTTGACTCTGATCCTAAAACAAGCTCTAAAATC
ATATACAGAGTAGTACTCTTGTCTCCCGAATAGACGCCCCCCCCGCTAAT
TGCTAAGAGAAAAAATCCACCCGCTCTTATTAAAACCCCCCCCCCACTAA
TTAAATTTGAATAATATTACCCCCTGCTTATTCGGACCTCCCTGTCTATT
CGGGAAACAAGAGTATATGAGCTATACAGAATTTAAAGTACTTGAAAGTA
ATGCGATGTGAAAGTTCTTGTTTTTTAAACAAAGTATCGTGAATATAGTA
TAAGAAAACCCTATGGTATGAACGGTGTTTGGGATATCAACTTTAACACT
CAATATTGATTTCAAAGATCAGCAAATACGCCGAAGTCTCCAAAAGAGTT
TTAATTCTACTGTGGTTGTGTTTATGTTCCACAATGAGTTAATTAAGTTG
AAAGGGGTTTAGCAATTTTAAAAAGTCAAGTCTCCAGTTTCCATGTTTTC
TTTTTCCTGCTTATATATTCCATTTTAGGTCATAGAGTATTCCTGATCCC
TTTGGGAAACGATGTATGATTGATATATCAATTTTATTTCAGGTTGTAAA
AAGAGTTCTTCAAAGCGAAAGAACTCTGGAAACCTCACTTCGTGCTCACA
ACTGGACAGCTTGTTCACACTATGTGTGAGATATAAACTGGAGCTTCAAG
CTAAATTTCACTTGGCGACTTGATACGAAACCAGCTGGCAAACACCATTA
NACCTCACTTCGTGCTCACAACTGGACAGCTTGTTCACACTATGTGTGAG
ATATAAACTGGAGCTTCAAGCTAAAATTCACTTGGCGACTTGATACGAAA
CCAGCTGGCAAACACCATTATTTCAACGTCGATCCTGCGTAAAGAGTCAA
TTCTCAAAGTACAAATTTTCATTCTATATGGAATGTGTGGTAAAACATTT
GTAGATCTTCGCCCCAACAAATTATCATGTTCTTGCCTCGACAATTTTCT
CCTACAAAACCTTAGAATTACAATGTACATTTTCAGAGGCTTGAAAAGCG
TATTGATAGCTTTAGGGTTCCAATTAATTACTACATATCTCATTATACAC
CCCTGTCTCATACAGTCCCGGTGGAACTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020554XLOC_020554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035231-exon-sc0001277-1575043694:46808..46853TCONS_00035231-exon-sc0001277-1575043694:46808..46853Clytia hemisphaericaexon
TCONS_00035231-exon-sc0001277-1575043694:44873..45411TCONS_00035231-exon-sc0001277-1575043694:44873..45411Clytia hemisphaericaexon
TCONS_00035231-exon-sc0001277-1510915933:46808..46853TCONS_00035231-exon-sc0001277-1510915933:46808..46853Clytia hemisphaericaexon
TCONS_00035231-exon-sc0001277-1510915933:44873..45411TCONS_00035231-exon-sc0001277-1510915933:44873..45411Clytia hemisphaericaexon
TCONS_00035231-exon-sc0001277-1491911889:46808..46853TCONS_00035231-exon-sc0001277-1491911889:46808..46853Clytia hemisphaericaexon
TCONS_00035231-exon-sc0001277-1491911889:44873..45411TCONS_00035231-exon-sc0001277-1491911889:44873..45411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001277supercontigsc0001277:44873..46853 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.29013	1.74755	1.15784	1.256	0	0	0	0.113568	0	0	0	0	0	0	0	0	0	0	0	0.457105	0	0	0.31343	0	0	0	0	0.152653	0	0.385437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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