TCONS_00035228 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00035228
Unique Name	TCONS_00035228
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	801

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001277:17793..26172-

transcript sequence

>TCONS_00035228 ID=TCONS_00035228|Name=TCONS_00035228|organism=Clytia hemisphaerica|type=transcript|length=801bp
atattAAAAATGCGATTATTAGATTCAAACAATTTATGTGGCTTTGTCTA
ACTTAGTAATTATGTTtaatttgtttaaaacaaacttttattcATTTCAG
GATCACACTGGGTTACAGAGCAGGACGTATTTACAGTGCACTTGTATCGA
GAAAACCTTTTTGCAGAGTTCAACATTCTGAATGTGCTGATGAAACAACC
ATTCCATATATTCAGCTGGGACATACAATTTTAATAGCTGTCAGTGAATC
TCATTGGATTACTGTAACGATTGTCTGCAAATTTTCTGGAGCCTGGAAAC
AACTCAAGCACTACAGCcatcaatgaaagaaaatataaaagctTTTGTGA
CAATGATGGCGTACTCCAAATACACCAGATTATCATAGGATTAACGTTGC
TTCAACACCATAATGTGAATAGGCAGATTAAAGACATCAAATCGAACTTA
AAGCTGTCCAGTCACTAAGATCACACTGGGTCACACAGCAGGAAGTATTT
GCAGTGCACTTGTATCGAGAAAACCTTTTTGCAGAGTTCAAAATTCTGAA
TGTGCTGATGAAACAACCATTCCATCCATATATTCAGCTGAGACATGCGC
AATATTTGCTTTTTCAGGTCACGCCTTAGAAGTGAGGCCTTTGTAGCGGC
AATACAAGAAACACGTCTAAATTGACACCCAATACCAAAAACTTCGAATT
CGAACAATCCCGAAGATAACAATTGAAGTTAACCTGATCAATCTGATGCG
ACCTTTACACTCTAATAAAATTAGAGgaAAGCACCTAACTTCGAACTTCA
A

Run BLAST on NCBI

transcript from alignment at sc0001277:17793..26172-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00035228 ID=TCONS_00035228|Name=TCONS_00035228|organism=Clytia hemisphaerica|type=transcript|length=8380bp|location=Sequence derived from alignment at sc0001277:17793..26172- (Clytia hemisphaerica)
ATATTAAAAATGCGATTATTAGATTCAAACAATTTATGTGGCTTTGTCTA
ACTTAGTAATTATGTTTAATTTGTTTAAAACAAACTTTTATTCATTTCAG
GATCACACTGGGTTACAGAGCAGGACGTATTTACAGTGCACTTGTATCGA
GAAAACCTTTTTGCAGAGTTCAACATTCTGAATGTGCTGATGAAACAACC
ATTCCATATATTCAGCTGGGACATACAGTACGTAATATTTGGTAAAAAAT
GGTTTATTTTCATCAACCATTACTTCCTATAGAATACATGTCTGTCAGTG
ATGAATAGGTTTTATCATATTTCAAAAATCATCTTAGACAAATTTGTAAA
AGGTACAGTGCCTCATGCAAATCATTATCTAATGTATCAAATGGTGCCAA
ACTATAAGCTATTAGTTAATCATATCTCCAAACGTGTTCTTTTCTTTGTT
CACAGCTTTTTATACAATGCTAAGGTATACCACACAGAAACAGAAAAAAA
AGACACAAAGATGGCCATCTGCATATTGGGATCAAGAGGACAATTTTTGT
TGGCCTTTAAAAAGCCTGGAGGTGGTTACTTACATTAACNGCCTCATGCA
AATCATTATCTAATGTATCAAATGGTGCCAAACTGTAAGCGATTAATTAA
GGTTGAATTCTTTCTTTAGGTATATTAAATCAAATAAGCACCAGAATACC
CTAGTTCATTGCTCTGATATTTTTATTGTTGCTTTAGATTTTAATAGCTG
TCAGTGAATCTCATTGGATTACTGTAACGATTGTCTGCAAATTTTCTGGA
GCCTGGAAACAACTCAAGCACTACAGCCATCAATGAAAGAAAATATAAAA
GCTTTTGTGACAATGATGGCGTACTCCAAATACACCAGATTATCATAGGA
TTAACGTTGCTTCAACACCATAATGTGAATAGGCAGATTAAAGACATCAA
ATCGAACTTAAAGCTGTCCAGTCACTAAGTAATACATCACCTACTACTTA
CTTAGTAATTTATTATGATGACGATCGCATAGAGTTTGTTTGATCCACGC
AAGGTTTGGCCTAAAGAATTCATCCCTTTCTGTAAAATGTAAATAAAATT
AGACATCCTTTTTATCTTACTAAAGTAGCATTCACATGAGGGACAAATAA
ATATGCCCTCATTTTCGATGATATGAATCTTCTTTATATTGAAAATGCGA
TTACTAGATTCAAACCATTTATGAAAGTAATATTGAGCCCTTGTCTGACT
TAGTGATTATATTAAATTTGTTTAAAGCAAACTCTTATTAATTTCAGGAT
CACACTGGGTCACACAGCAGGAAGTATTTGCAGTGCACTTGTATCGAGAA
AACCTTTTTGCAGAGTTCAAAATTCTGAATGTGCTGATGAAACAACCATT
CCATCCATATATTCAGCTGAGACATGCGCAATATTTGGTAAGGAAAGGTT
TATTTTTGTCAACCAGGACTTCCTATAAAATGCATTTTTGTCAGTGATGA
ATAGGCTTAAATGTATTTCTAAAATCATCTTAAACAAATTTGCCTCTTGC
AAATCATTATCTAATGTAAAGTTACCAAACTGTAAGGGATTGATTAATCA
TATTCCCAAAACTGTTCTATTCTTTGTTCAGTGCTTTTGATACAATGCCA
CATAGGGAAGATATCAATTTTCAATTATTTCATGGCTTTGTTTCAAAGTT
AACTTCTGAAGGAGGTATATATTAATTGCTGAAAGGGCAATCATAGATCG
ATTTAGAGGGAAAATTTTTATTTTCATCGTTTTTATGGCAAACTCATCTT
AATCCAAAAATTGCTTTAAAAAATTGATGTTTTTTTGAGATTAGCAGATT
TCTTTCAAACAAAGATGGTACGCCATAATAACACCTTCAACTATGAAGGC
AAAAGGGCATCAACAGAGTTATCCAACCACGTTAGGGACCTGCAAATCAA
AAACATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGT
ATGTCAACGGCTTGGTAAACTGCAACCTCTGTTTCACAGAAAAATTTCAC
TTTATTACATCAGANATACAACCAAAATTATCATGGGAGATTATCGACCA
CGCCCGCTCGTATGTCAACGGCTTGGAAAACTGCAACCTCTGTTTCACAG
AAAAATTTCACTTTATTACATCAGAGCTTCATCTCGTAAACAAAAGACTT
ATTTCCACATGTCGCCATAACAACAGATTTAATCTGAAGACCTTCAAATC
GGTTCACCCGGATGAATCATAAATTTTATTTTCAATATGTTTTAGTAATT
GTTTTTATAACAGTTTTATTGCTCAAATTATCCAGTTTTTCAACTTTTTA
CGTCATCGAATTTCAAATTTTCAATCATTACTGTACATATGATTAGTTGG
TTTAGCTTAGTTTGGCTTTTAAAATATCGATGGATTTTTTAGTATACACC
TTAATAATGAGAAAAACCTTAAAAAATTGGCAAAAATCATTCTCTTGTTG
TAAAAAATTACTCCTACATTTAAAACTCATCCTTTTTTTGAATTTCATCG
AGTGATTTTTGCTCAATTTTTTGTTTGGTCATTTCTTTCATAGGACCCCA
CAATAAGAAAAATGCTGATTTACAAGTGTGGAGCTAAATCTATTGAGGAA
TGCTTGAAAGAAATTAGTTCGTNAAAAATGCTGATTTACAAGTGTGAAGC
TAAATCTATCGAGGAATGCTTGAAAGAAATTAGTTCGTCAAAAAAAGGTT
GGTATCATAGCTTTGAATGGGCTTTGAATAGTTTTGATTGTTTTAAGTTG
TATATTTATTTTTAGTTTATTTGTTTTATATCAACAAACATATCAATCAA
AAATATACTCAATATGGTTGGTTTGATGGGTTTGATTCCTACTAGCATGT
TCGTCTTCATCCAAAATATTGTCAAGCAGTCTGGATTAAGAGCACCATGA
ACGCTTGCGCAGAGTCAACCCAACGCTGCCCAAGAGGGCTGGATGAATTG
ACAGATCGTAGTCAAGTATTCAAACCTTCCAATATCAACAACAGACCCTG
CCACCCTTTCAAAATCATACCAGCTGTCCAAAGAACAATAAACACTATCT
TCAACTTATCAATGATTTTCAGAATCCAGATGGCACATGTAAGGATAGAC
CAGGAAAATCGCAGCATGGACATAAGATGAAAAGTTATGCTGAACTTGAC
AACACAGAATTATAAAATTTTGGAAATGTATATTTCTAAATTTTAATAGT
CCCTTTTCTGAAAGTGAAAGAAATGACTTGGGAGGTAATTTATTCAAAAA
ACAAACAATGTGTCTGTCTCCTATTAGGAAAGCATTAGTCAACAAGAGGT
GAACAAGCAAATGCCTGGTAATATGATGTAGTTTTGGCCTGAAAAATCAC
ATAACAAAAATCATTGCCTTTGATAAAAGTTAAAAAATAGACATACAAAT
AGCATTTCATATTCTGACCAAAAGATGTGTTTCACAAAAGTTTCAAAACT
TTGATGATGTGAGCAAAAATGAATGAATCTTTTTTTCTGATATCATCGAA
GAACTTTGAAAAGTCTATTCAATAGACTTCCGTAATCAATGTGGTCTCTC
TATCTTAGCATAGCGGTTCTTCTCACAATGTCGTCAGTATGTAACTATGC
AATTAACATGTAAACCAATATTTCCTCCTGTCCATCTGGACAGGAAAATT
GTATTAATAGCAAGAAATATACAACTCTGCTAGCTGTTCTCCTTCTTTCA
AGTACCAGAAAGAGGGTTTTGAAATTCAGCACATACTACAAACGTTTTTT
TGTCTTATCTACTAGCCACACTTTTCCATGAAAAGTTCTGTTCCAAAATA
CCACGAGATTTCTCAATAAGTAATGACCACTTCTCTCCACAGTTTCATAG
TTTGTTAAACTTTTCCCAGACCATTCATTCCATAGACTCCAAAAGCAGCC
AGCTTTCCCAGTTAATTACTACCATCTCTGCAAAACTCTCTGTTTATTCT
GGTTTATTACATCTCTCCTCGATAACTTCTGTTCCAAAATACCACTGGAA
CTGTCAATTTAAAATGAACACAGATTTCTCAATGAGTTTTCACTTCTTTC
CTCAATAGCTGCATGATTTACCCCACCTCTCCTAAAAAATTCAACCACCA
ATAAAAACCACTTGTCTTATCCAAATTTCAAAGAATTAAAACAAGTTTCT
TGACAGTTCCACAGTGTGCCACAGGTTCACACATGTCTAACATCAGCTCT
TTGTCTAAATACTATTGTCAATAAATCATGACCACTTCTCTCCACAGTTC
CATGGCTTGCCATGCCAAGCCTACTAGAAAATTCGCTCTCAAAATACCAT
CAAATTCCACCACTTTCCAATTAATTATTACCACGCTCTCCAAAGCTCTC
TGCTTGTTGTACCTCTCCTAAGAGATTTCATTGCCACTGTATTCCCACTT
CTCTCCACATTTGTATTGCTTTCCACACCTAGAAAATTCAGTCTCAAAAT
ACCACTGGATTTTCTCAATTACCTCACTCTTCAAAGTTTCACGGTTTACA
ACACCCCTCCGAGAAAACTCACTTCAAAGATACCACCAGTCATTACCACG
CTCTCCGCAGTTGTCTCTAGAACTGATCTTTCTAGCAGGTAACCTAGAGC
TCTCTCAGCAGGTTTACGGTTTGTAAGACCTCTTGTGGTAATTCCATCTC
AAAGTACCACTGTATTTATCAATAGATAATTACCATGGTTTCCTAACCTC
CTCGAAAGGATTCATCCTCAAAATACGATTACATTTCTCAATGAATTATA
ACCAGTTATCTTAACAGTTCCACAGTTTCCCACATCGCCCACATCTCTTC
TAGAATATTCAGTCCGAAGATCCCACTGAATTCTATCAATAAATAATGAT
CACATTCTCCAAAGATTCATGCTTTGCCAACCTCTGCTATAAAACTCACT
GTGAGAATACCACCGGTTCTCTCAGTTAATAACTACCATGCTCACCAAAT
TCTATCGGTTTGCTACACGTCGCCTAGAAAATTTAGTCTCAAATACAACT
GGGTTTTCTCAGTAAATTTCTACCATTATCTCCGAAGTTCCACGGTTTGC
ACAGCCTTTCCAGAGTATGCCTTTTCAGAATATCCCTTTCCGAGATGGCA
TTTCTATGGAATCCATTTTAAAAACTCCACCAATTTCAAGTTAACTACTA
CCACATACTCTCCAAAATTCTCTGTTTGTTACACCTCCTCAAAGATTTCG
CTGCCAAAATACCATTGTATTTCTAAATGAAATATTCCCCCCACTTCTCC
CCACAGTTGTATGGCTTGCCACACCTAGATAATTCAGTTTCAAAATACCA
CTGGATTTTCTCAATGAATAATGACCACGTTTCAAAGTTTCACGGTTTGC
AAACCCTCTCCTAGAAAACTCACTTCGAAAATACCACCACTTTCTTCAGT
TAGCTATCTACCACGCTTTTCAAAGTTCTCTGTTTGTCTCCTCAAAAGTT
CATCCTCTCCAAAGTTTCATCCTAGAAAACCCATTTTAAGTACCACCAGT
TTCCTCAGTTAATCACCACAGATTTACTATTTTATTTGTCACTCCTTCCC
AAAAAGTTCAAAATACCACTGGATTTTCTGAATGAACAATTGTCAAGTTC
TCCAAACTCTCATGGGCTGCCACACCTCTCATAAAAAAATTCACTACAAA
AACACCACCAGTTTTCTCAGTATTTTACCAACCCTCCACAGTTTCTTCTA
TGAATTCAGCCATACCACCAGTTTTTCCTAGTAAATTTATGATCATCTCT
CTTCAGTGCCACGGTTTGCTAATTTCCTCTCAAAGTTTCAGCCATAAGAT
ACCAACTCTCTTCTCAATATTTTAAAGTTACACTAGAATCTCAGGTTTTA
TGGCTCACATTTNTCTTCTCAATATTTTAAAGTTACACTAGAATCTCAGG
TTTCATGGCTCACATTTCCGATCCAAGCAAATTCCAATTCTCAAAATACC
ATTAACCTTCCAATGAAAAATATCTAAACAGTTCTACAGCTCACCACTCA
GTACCTCTTATTTCTTTATAAATCAGTCTCAAAATATATCTCTAAAGCTT
CAAGATTGGCTCACCTCTCCTTAAAAAATCCAGTCTCCAATAATCAACTT
CGCCACACCTCATTTCAGTCAATACCATTTCAACAACTCTCCTCCAAAAG
TCCAGTCTTCAAATACCACTGGTACCGGTACCACCATTTTCTCTCTTTCT
CTCTCCCACTTTTTCTCCTCAAGAGATTCATTCCAGATATACTGCCAATT
ATCTCAACGAGTTATAACCACTTCGCCACACCTCTCCTCCAAAAGTTTCA
GTCCTCAATAAATCACTGCAAATCTCAGTGAATGCTCACATCTTTCAACA
GGTCAAGGTTTGTCACATCATTCTTCGATAAGTTCATCCCAAATTTACCA
ACAATTTGGTCACCACAACTCTCCACTTCTTTCAACATTTCACGGTTTGC
ACCACCTCTCCTCAAAAGTTCATTTTCAAAATTCATTCAGAATTTCTTAA
TGTGATATTACCACACTCATTCCTAAATTTTAACGTTCTCAGGATAGATT
CCAACGCTTATATCAAGCAAGAAATGGTGAAAAGCCATCCATGGCTCAAC
CGTCGATTCAGCCAAGAGTATAATGCCTGCCAAGACATGATCAACTGGCT
AAGAAAGATGAGAAGGAGCTAAGGACGGATGTTTCGTTGATTACGCATCA
CATCCCTCTGTCAGCATGAAGGAATTGTCCGACGATGAAACTTTTCTGAA
AAACCAGTAAATGATCCAGCATAGGTAAGCCTCTTGAATAACAACCACTA
CCACTTGATTAGGCTCTAAACCGAAAGTGTTTACTGATGTTTGCTTTATT
CATTTTCGTTCCTTATTGTATACAAGGTCATCATTGACATAAGGGAACAT
TTTTCAAGAATAGCCCTGCATTGCCAAAACAAAATTTTAGCTATCTTGCT
GGTTATTTTACAGTATTTTATTTATATTTTGTTTTGTTGCTAATCACCCC
TGTGTCACAGACCCAGTGGGATCCCATTCCAACTAGAAAATTTGGCAAAA
ATATGTTCCCTGGTGGGAAAAGACCCTAGAATTTTAGCTCCACTGGGAAA
TCAATGTCTAAAGATTACATTCCAAAATTTTTTAACCTTGGAACAAGAAC
AATAAAATTTATATCCCCATTGGGATTTCAATGGGGATTTTTATCCCCAC
TGAAGAAAAAAAAGTTCCACCGGGGCTGTGAGACAGGGGTGTTCTTAATT
AATGGCTTCTTCTTTTATAGCTTTTTCAGGTCACGCCTTAGAAGTGAGGC
CTTTGTAGCGGCAATACAAGAAACACGTCTAAATTGACACCCAATACCAA
AAACTTCGAATTCGAACAATCCCGAAGATAACAATTGAAGTTAACCTGAT
CAATCTGATGCGACCTTTACACTCTAATAAAATTAGAGGTGGGTAAATGA
CGTGGCTAGTTCTTGGAAATAATATATTTAGATGCTAAAAATATCATCTG
GACTCTCTTTGTGGAAAAATACCCTGGAATTTCAAACACACTGGGAAATT
TAGTTTAATTTTATCCCATTCGAAATTCAATGTTTAAAAATGGCACTCCA
AAACCATCCCCACTGGATTTTTTAACCTTAGATCAATAGAATTTCTATCC
CCATCGGAATTTCAATAGAAGTTTTTATCCCAGCGCAGCACCGAGGATAA
AAGCTCCACCGGGGCTGTGAGACAGGGGTGTAAAGCCCTTTAACATCATG
TTAAGTTTTTAAAAGGGATCATTATTGTACACGTTTTTTTTTAAGAAACA
CACTTTTAAGAAACATGAGGCGCAGAATGCCTAATGCTCAGTTTGAATGT
TTTTGATTTTAAGTTTGACACGCGTTTTCTGAATTTTAATTAGCTTTTTC
AGATAAAAACTAAGAAACATCTAAGAAACATGCTGAGGCTGAGAATGAGA
AAATAACATTTTTTAATTCGGTTTTTCTTAAGAGCCTTCCAATCCAGCCT
TCCATGAGGCTGATTATGTCAAAAAGTTTAGAAACATGTAAGAAACATGT
AAGAAACATTTAAGGCTCAAAAGGCCGATTTCTTAAGAAACATTTAGGCT
GCTTGGTAAAACTAGTTTCTTAAAAATAAAAACGTGTATCAGAAGTAAAA
AATAGTCTTTTTGACTACGACAGATAGTTGATCTATTCAAGGAATTCTTG
AAGCTTAGAAGTTCAATCAAAAGGTCCAATATTCAGAAAGAGCCTCATTC
TCAATCATCAATTATCTATAGTGATTAAAAATTTCTATTTTTGTTTTGTT
TTCAGGAAAGCACCTAACTTCGAACTTCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020552	XLOC_020552	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001277	supercontig	sc0001277:17793..26172 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.910494	0.817764	0.191971	0	0.511812	0.0780223	0.457472	0.378238	0.116872	0.296794	0.230302	0.26282	0.0489502	0	0.272721	0.331684	0.224941	0.46674	0.469611	0.278121	0.254163	0	1.20741	1.11493	0.354969	0.470769	11.0467	3.1374	0.0993107	0.381611

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00035228 vs. Swiss-Prot (Human)

BLAST of TCONS_00035228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00035228 (transcript) - C. hemisphaerica