TCONS_00035227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035227
Unique NameTCONS_00035227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035227 ID=TCONS_00035227|Name=TCONS_00035227|organism=Clytia hemisphaerica|type=transcript|length=677bp
ATTATGAGAAGGATGTTGTATGTGGAGAGGAAAGTCAAGATGAAAAAGTt
atgattttctaattttacaaattttgaatttagtcAAATGAACTTTAAGT
TTATTCCAATTACATTTTACGATTTTATATTCGTGGCACATTTTACAGCA
CATATTCTTAGGCCAGCCGaatCACCAAAGGGAGATAAACTATACTGCAA
TGATTAACCTTGGACAACAGGAACAACAAAGGGAGATAAAACATACGAAT
GATTAACCTTGAACAACATGAACAACGGTCCACCACTTCCCTGATGAAGA
TTTAAAACCCCAACATCAAACTAGTTAATGAAGAAGAGCACAAAATTCGt
TTGATTTTCAAGAAAGATGACAAGTTAGGAGCATTTGCTGATATCTGTTT
ATGACGTTTATCAATCACTGGGTATAAAAGTTGTGTTCAAGCTGTTGTTT
ATATTACTAAATCTAGTGCAACTTATTAAGCTGGAAGTCCAAGAAAACAG
CAACTACCAATTGGTCAACTGTGCTTAATCATCAACCGCTAGAATTAAAT
TATGTTAAAGGCTATTCCTAGCTACCATTAACTACAAATTGTGAAGTTTG
ACAACGATGAAGTGCTGAGGAGAGgttctaatttttttcatatttttatg
ttttgataaatTCAGGAAATGTTttcc
Run BLAST on NCBI

transcript from alignment at sc0001277:7651..11954-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035227 ID=TCONS_00035227|Name=TCONS_00035227|organism=Clytia hemisphaerica|type=transcript|length=4304bp|location=Sequence derived from alignment at sc0001277:7651..11954- (Clytia hemisphaerica)
ATTATGAGAAGGATGTTGTATGTGGAGAGGAAAGTCAAGATGAAAAAGTT
ATGATTTTCTAATTTTACAAATTTTGAATTTAGTCAAATGAACTTTAAGT
TTATTCCAATTACATTTTACGATTTTATATTCGTGGCACATTTTACAGCA
CATATTCTTAGGCCAGCCGGTGAGTTTTGGCTTTTGTTGTTTTTTTTTCT
GTATTTTTTGTTAGGTTTTTGTCTCTTTATAAGGTAAGGCAGGGATAGGG
TCACACCCTCTTCTCATAGACCAAGTAGGATTTTTTTAGCCAGTGGGGGT
AAAAATATTTCGATGGGAATTGTTACTTTTTTACGGTTGGGGGTTTGAGT
TACACTGTTATCAAGTCAGAAAATTCTGTGAAGTGGAGAATATAGCCTGG
ATATCCAAGCTTTGAACTTTTTCATAGTCTAGTTTTTGATAATTTATGCA
ATTTCAGACTTTGTATATTGAGGTATTGAAACTCTATTTTTCTAAAATTT
AAAGCTTGAATATCCAGGATAGCACATATTTGGTGAGGATTTGCTTGTTC
TTAACTTCAGTTGATAGAATCTGAGAATGTCTGTTTGTATGTATGTCTGT
ATGTCACCTAAAAGCTAAGGGGCAGGTTGAAGTCTTCAAAAAAATTCCGA
TTAGGTTGAAATTTTGCAACACTTGAGTCGATTTGATTGAAACTCTGCAC
ACGTGTTCTTTGGTTGAATGTCTGGGTCTCTGTTTTCATTTTTGAAAATA
TTGATTTTAAAGGGCGTGGTCATGACTTCTTCGCCAAAACGAGGCTAAAA
TCTTTTGGGCAGGCTGGAGACCTCAAAAAATATTTGAACATTTTGGAGTC
TACTTAGAGAAAGTTATCATATATCAAAAATTTTCTGTTGATGTTTACAA
CTCGGCCTACAAGTAATATTGGAAGTTCAGTGCGGTTAGCACGTTCGACA
GTTCTATTACCTTCAGCGGTTCAAAATTTGAAGTATAATTTTTTAACTGG
GGATGACAGTTTGGCCAACTTTTCCAGTGGGAGGGGATCCCACCAATTCT
TTGTGAGTAGGGGGTGTTAGGATTTACATTCAATTTGCAATTAGAATTTA
TCTAAAACTGGAATCAGGCTTTCTGTTGTGATACCACATTTGAAGGGTTT
CATAGTGTTGCTAGCAACATAGCAAAATAATATTTGACCCTCTAATATGA
AGCTTACTCTTGAAAAACTTAAAATTTATTTCTTGGTGATTTTGTGAAAA
ATATGTCTCTTTCGAAAAATTCGGCCAATCTGGTCTGTAAAATACACATT
AGTCGTGTGATAAACTCAAATTTCTTTTTGCATAATAATATATTTGACAT
ATTTACTTCACTCCTGCGAATTTTCAAAGCGATACATGTATGTATTTGTT
GAGATATCTCCGTTTTTTCAGGACATAACCCCTTTGAAAAAATTCATCTT
AAAGGTCCAACTCTTTTTACTTAGGGATAGATCTTTGTACTGACTTTACC
ATTATTTTTCTGACGTTCCAATACCCAGACAAAATTCCAAGCACTTTTTC
CACTGGCCGTTTCTCAGATTAGAAATAAATCAATCAATATCAATGAAAAG
CCTTGAGGTTTGTCACAAGACTCCTTGGATGCCCTATGAAAAGTTTACTT
TCAACGATTGTTTATCACAAAGCGAGCGAAAGTTTTTTGATTTTCCCCAC
TTTTTTTCATATTCTTTGCATTTTGCTGACATATAGTAAAAGTTTCAAAT
ATTGAGTTTTAAAACACAATTGACAATTGAGTAGCTTGGCCGTATAACGG
CCACAAAAGTGCTTGAAATTTTCACTGAATGCCTAACTTTTCGACCGGTA
TACATCACAATTGCCCCATTTTTTGATACACATTTTGCCCTTATCTCATG
AGCTAATCAACCAATCAAGTGAGTTATTTTTTACTTGTTCCAAATCGAAC
CTCAGATTTGTGTCGACCTTGCCAGCCTCTACACTTTCTAGGGACCTGAG
AGTTTCACAAAGATGGATTTTACAGGGATGAATTACTTTAATACACCCCT
GTCTCGCAGCCCCGGTGGAACTTTTTTCCACAGTGGGAATATTTTGTTTT
AAGTTTAAATCATCCAGTTGGGATGGTTTGGGAGCGTACTTTTAACATTG
AATTTCTAATGGGAATTAACGTCAACATCTCCATGTGGCTGAAATTGTAG
AGTCTTTATCCCACTGGGGACGAAATTTTGGTTAATTGTTTTGGCTGGTC
GCAAAAGATCTGAAACAGGGTTGTTTTAATTTTTTTTTAATTTCTTTTGT
TTTAGAATCACCAAAGGGAGATAAACTATACTGCAATGATTAACCTTGGA
CAACAGGAACAACAAAGGGAGATAAAACATACGAATGATTAACCTTGAAC
AACATGAACAACGGTCCACCACTTCCCTGATGAAGATTTAAAACCCCAAC
ATCAAACTAGTTAATGAAGAAGAGCACAAAATTCGGTAAATTATTATTTT
CGTCATTGAAATTGCACTATTTCCTTTCTTCCTCGAGATAACCAAGGCAA
CGCAAAAGGTTATTGATCAGTGTTCTCACAAAACGTTAGCTATTTATTTT
GAAACACTAAAGAAAAGTTATGGATTCCAAGGTACATAAAGACCAGTAAA
AATTTTTGACACTTTTCTTTTGTCTTTTTTCAGTTTGATTTTCAAGAAAG
ATGACAAGTTAGGAGCATTTGCTGATATCTGTTTATGACGTTTATCAATC
ACTGGGTATAAAAGTTGTGTTCAAGCTGTTGTTTATATTACTAAATCTAG
TGCAACTTATTAAGGTGAGTTTAAATCATTACACATGGATAAGCGACTGA
TTGCATTATCCTAAATCTTAAGACGTCTTCAGAACTTTTCAATGCTCTGT
TGATATTGAAATGCTAAGACAAAAGGCTAGTCAATAAAGCAAATGAATAC
CTTACCATGTCACAGAACCGCGATCAGCGCCGAAATATATCGACAATTCT
GGGTATTATAACGTTTTGCTGAATTTAAAGGTTGCGCGAGGATTGCAGTT
TCAGTACTTCCACTTTGCTTTATTGGATTTTTCGATTTGGGAGGAGTTAA
GTGGCTTCCAGGCTATATTCTCAGCCTAAAATTTAAACTTTTTGTTATTA
GCTGGAAGTCCAAGAAAACAGCAACTACCAATTGGTCAACTGTGCTTAAT
CATCAACCGCTAGAATTAAATTATGTTAAAGGCTATTCCTAGCTACCATT
AACTACAAATTGTGAAGCAAGTTTTCAGGTAATTATCATTCTGCTTAAAG
GGAACTCTAGACTAGAGTTAACTCTGACTGAACTTTGCTTTCTGATGATT
TTGATGGCACAGAGTCGGTAAAATAGACTAGAGGATTTCACCTTCTTGAA
TATGTTATATGAAAACATCAAAACAATAAAATGTTTCTAAAATTCCGTAA
AAGTATCTCCAAAATTTGAAAAAAATTGTTTCAATGGTCATGGTTTTGTG
TCTGTTTTTCTTCAAAAAGGGACTGGATCTAGTGGTACGGATTTGCTATC
ACCTCAAGCAAAGTCAAAAAATGGAGCCCGTCAAATTACACCGGGCCACT
TATCAGTCCCATCCAGTCCATCAGAAAGCTATAAATGGCCCCTGGGCTAA
GGCAACTCTGGCTCTCTGGGGGCTGTACTAGGTTCGCGAGGGGACAGGTA
TTTGAAAATCGACCACTTGAGAGACTAAATTTCGACATTTGTGCAATCCC
TGAAGAGACCATTTTTCCAATACTTAGCTCGAAATTACTAAATTTCATGA
ACTTTTGAGGAAGTCGATTTTTGATATTTTTTAATTTTGGGAAAATCATT
GCACATCGCAAATTTATCGTTTTTTGTGCCCCTTTAAGAGACTTTCGAGG
GTTTGAAAAGGGTATCCTTATTGCCCCAAATACCTGACACCCATTTCGCC
CGAAGTATCCCCTCCCTCCCGGGCTCTGGCTCTCGTTTAGGAATTTAAAT
ATATAAGTCTGATCATTCAATATGATTGTTTATTGTTCTGCTCTGCCTAA
CCTTACAATATCAAGTAGAATGGAAGAGGAGAAATCGTCGAAAGAAATCC
CGTTTCATTTTCTCATTCATTATTTCTTTTCCTTCCCAGTGTAGGTCAAG
TATCCATTCGCAGTCTTGTTATTGATTCTCTAATACTCTAATGTTATTCT
ATATTGCCTTGCGTCTTTTCAGGTTTGACAACGATGAAGTGCTGAGGAGA
GGTTCTAATTTTTTTCATATTTTTATGTTTTGATAAATTCAGGAAATGTT
TTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020551XLOC_020551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035227-exon-sc0001277-1575043694:11786..11954TCONS_00035227-exon-sc0001277-1575043694:11786..11954Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1575043694:9470..9649TCONS_00035227-exon-sc0001277-1575043694:9470..9649Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1575043694:9141..9271TCONS_00035227-exon-sc0001277-1575043694:9141..9271Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1575043694:8689..8803TCONS_00035227-exon-sc0001277-1575043694:8689..8803Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1575043694:7651..7732TCONS_00035227-exon-sc0001277-1575043694:7651..7732Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1510915933:11786..11954TCONS_00035227-exon-sc0001277-1510915933:11786..11954Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1510915933:9470..9649TCONS_00035227-exon-sc0001277-1510915933:9470..9649Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1510915933:9141..9271TCONS_00035227-exon-sc0001277-1510915933:9141..9271Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1510915933:8689..8803TCONS_00035227-exon-sc0001277-1510915933:8689..8803Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1510915933:7651..7732TCONS_00035227-exon-sc0001277-1510915933:7651..7732Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1491911889:11786..11954TCONS_00035227-exon-sc0001277-1491911889:11786..11954Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1491911889:9470..9649TCONS_00035227-exon-sc0001277-1491911889:9470..9649Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1491911889:9141..9271TCONS_00035227-exon-sc0001277-1491911889:9141..9271Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1491911889:8689..8803TCONS_00035227-exon-sc0001277-1491911889:8689..8803Clytia hemisphaericaexon
TCONS_00035227-exon-sc0001277-1491911889:7651..7732TCONS_00035227-exon-sc0001277-1491911889:7651..7732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001277supercontigsc0001277:7651..11954 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.733019	0	0	0	0.634837	0	0	0	0	0	0	0.221459	0.435836	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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