TCONS_00035225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035225
Unique NameTCONS_00035225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035225 ID=TCONS_00035225|Name=TCONS_00035225|organism=Clytia hemisphaerica|type=transcript|length=505bp
agaatCACCAAAGGGAGATAAACTATACTGCAATGATTAACCTTGGACAA
CAGGAACAACAAAGGGAGATAAAACATACGAATGATTAACCTTGAACAAC
ATGAACAACGGTCCACCACTTCCCTGATGAAGATTTAAAACCCCAACATC
AAACTAGTTAATGAAGAAGAGCACAAAATTCGtTTGATTTTCAAGAAAGA
TGACAAGTTAGGAGCATTTGCTGATATCTGTTTATGACGTTTATCAATCA
CTGGGTATAAAAGTTGTGTTCAAGCTGTTGTTTATATTACTAAATCTAGT
GCAACTTATTAAGCTGGAAGTCCAAGAAAACAGCAACTACCAATTGGTCA
ACTGTGCTTAATCATCAACCGCTAGAATTAAATTATGTTAAAGGCTATTC
CTAGCTACCATTAACTACAAATTGTTTGACAACGATGAAGTGCTGAGGAG
AGgttctaatttttttcatatttttatgttttgataaatTCAGGAAATGT
Tttcc
Run BLAST on NCBI

transcript from alignment at sc0001277:7651..9651-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035225 ID=TCONS_00035225|Name=TCONS_00035225|organism=Clytia hemisphaerica|type=transcript|length=2001bp|location=Sequence derived from alignment at sc0001277:7651..9651- (Clytia hemisphaerica)
AGAATCACCAAAGGGAGATAAACTATACTGCAATGATTAACCTTGGACAA
CAGGAACAACAAAGGGAGATAAAACATACGAATGATTAACCTTGAACAAC
ATGAACAACGGTCCACCACTTCCCTGATGAAGATTTAAAACCCCAACATC
AAACTAGTTAATGAAGAAGAGCACAAAATTCGGTAAATTATTATTTTCGT
CATTGAAATTGCACTATTTCCTTTCTTCCTCGAGATAACCAAGGCAACGC
AAAAGGTTATTGATCAGTGTTCTCACAAAACGTTAGCTATTTATTTTGAA
ACACTAAAGAAAAGTTATGGATTCCAAGGTACATAAAGACCAGTAAAAAT
TTTTGACACTTTTCTTTTGTCTTTTTTCAGTTTGATTTTCAAGAAAGATG
ACAAGTTAGGAGCATTTGCTGATATCTGTTTATGACGTTTATCAATCACT
GGGTATAAAAGTTGTGTTCAAGCTGTTGTTTATATTACTAAATCTAGTGC
AACTTATTAAGGTGAGTTTAAATCATTACACATGGATAAGCGACTGATTG
CATTATCCTAAATCTTAAGACGTCTTCAGAACTTTTCAATGCTCTGTTGA
TATTGAAATGCTAAGACAAAAGGCTAGTCAATAAAGCAAATGAATACCTT
ACCATGTCACAGAACCGCGATCAGCGCCGAAATATATCGACAATTCTGGG
TATTATAACGTTTTGCTGAATTTAAAGGTTGCGCGAGGATTGCAGTTTCA
GTACTTCCACTTTGCTTTATTGGATTTTTCGATTTGGGAGGAGTTAAGTG
GCTTCCAGGCTATATTCTCAGCCTAAAATTTAAACTTTTTGTTATTAGCT
GGAAGTCCAAGAAAACAGCAACTACCAATTGGTCAACTGTGCTTAATCAT
CAACCGCTAGAATTAAATTATGTTAAAGGCTATTCCTAGCTACCATTAAC
TACAAATTGTGAAGCAAGTTTTCAGGTAATTATCATTCTGCTTAAAGGGA
ACTCTAGACTAGAGTTAACTCTGACTGAACTTTGCTTTCTGATGATTTTG
ATGGCACAGAGTCGGTAAAATAGACTAGAGGATTTCACCTTCTTGAATAT
GTTATATGAAAACATCAAAACAATAAAATGTTTCTAAAATTCCGTAAAAG
TATCTCCAAAATTTGAAAAAAATTGTTTCAATGGTCATGGTTTTGTGTCT
GTTTTTCTTCAAAAAGGGACTGGATCTAGTGGTACGGATTTGCTATCACC
TCAAGCAAAGTCAAAAAATGGAGCCCGTCAAATTACACCGGGCCACTTAT
CAGTCCCATCCAGTCCATCAGAAAGCTATAAATGGCCCCTGGGCTAAGGC
AACTCTGGCTCTCTGGGGGCTGTACTAGGTTCGCGAGGGGACAGGTATTT
GAAAATCGACCACTTGAGAGACTAAATTTCGACATTTGTGCAATCCCTGA
AGAGACCATTTTTCCAATACTTAGCTCGAAATTACTAAATTTCATGAACT
TTTGAGGAAGTCGATTTTTGATATTTTTTAATTTTGGGAAAATCATTGCA
CATCGCAAATTTATCGTTTTTTGTGCCCCTTTAAGAGACTTTCGAGGGTT
TGAAAAGGGTATCCTTATTGCCCCAAATACCTGACACCCATTTCGCCCGA
AGTATCCCCTCCCTCCCGGGCTCTGGCTCTCGTTTAGGAATTTAAATATA
TAAGTCTGATCATTCAATATGATTGTTTATTGTTCTGCTCTGCCTAACCT
TACAATATCAAGTAGAATGGAAGAGGAGAAATCGTCGAAAGAAATCCCGT
TTCATTTTCTCATTCATTATTTCTTTTCCTTCCCAGTGTAGGTCAAGTAT
CCATTCGCAGTCTTGTTATTGATTCTCTAATACTCTAATGTTATTCTATA
TTGCCTTGCGTCTTTTCAGGTTTGACAACGATGAAGTGCTGAGGAGAGGT
TCTAATTTTTTTCATATTTTTATGTTTTGATAAATTCAGGAAATGTTTTC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020551XLOC_020551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035225-exon-sc0001277-1575043694:9470..9651TCONS_00035225-exon-sc0001277-1575043694:9470..9651Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1575043694:9141..9271TCONS_00035225-exon-sc0001277-1575043694:9141..9271Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1575043694:8694..8803TCONS_00035225-exon-sc0001277-1575043694:8694..8803Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1575043694:7651..7732TCONS_00035225-exon-sc0001277-1575043694:7651..7732Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1510915933:9470..9651TCONS_00035225-exon-sc0001277-1510915933:9470..9651Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1510915933:9141..9271TCONS_00035225-exon-sc0001277-1510915933:9141..9271Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1510915933:8694..8803TCONS_00035225-exon-sc0001277-1510915933:8694..8803Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1510915933:7651..7732TCONS_00035225-exon-sc0001277-1510915933:7651..7732Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1491911889:9470..9651TCONS_00035225-exon-sc0001277-1491911889:9470..9651Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1491911889:9141..9271TCONS_00035225-exon-sc0001277-1491911889:9141..9271Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1491911889:8694..8803TCONS_00035225-exon-sc0001277-1491911889:8694..8803Clytia hemisphaericaexon
TCONS_00035225-exon-sc0001277-1491911889:7651..7732TCONS_00035225-exon-sc0001277-1491911889:7651..7732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001277supercontigsc0001277:7651..9651 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.168623	0	0	0	0	0.341061	0.23067	0	0.234094	0.318853	0	0	0	0	0.0195465	0	0	0	0.222823	0	0	0.294782	0	0	1.00916	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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