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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035224 ID=TCONS_00035224|Name=TCONS_00035224|organism=Clytia hemisphaerica|type=transcript|length=1307bp
CGTTTGTTGGTGACTCTGAGGTTAAAGCATTTGTCTGGGTGAAACTCCAT
GGACCATTTGTTTTCCCATTTTACCAATTCGTCTAGGtctttttgaagct
ttttgcAGTCTTCCTGTGTGTGTATTGAGCGGTAAAGATATGCATCATCG
GCAAACAGcgcaattttcgattttgattcAAGTGGCATGTCATTAATATA
GATTAAGAATAGCAGTGGCCCGAGGACAGTTCCTTGGGGGACACCTGAAA
TGACGTTTGAGTTTTTGGAGGATTTCCCACGAACAACAACACATTGGGTG
CGATGAGATAGAAAGTCTGTAACCCAAGTTAGAACGTTGCCATGTACTCC
ATAATGTTTAAGCTTAATAATTAGTTTACGATGGCATACCTTATCGAAGG
CTTTACTGAAGTCAAGTAAAATACTGACAACttgttctttgttgttgatA
GCTCTAGCAAGGGTATCAATGGTTTGAAGCAATTGGGTCTCGCACGATCT
TTTCTTGCGAAAGCCATGTTGAGTATCTGTAAGACAGCTGTTCTCCTCGA
GGTGGTTGATGATGTGGCTATGAACGATGTGTTCTAGAACTTTGCAGGTG
ACAGACGTCAAGCTAATCGGTCGATAATTTTCTGCTTTGGACCTATTTTT
GTTTCCTCCTTTGAAGATTGGACTGACTAAATTATGTTTCCAATCAGTGG
GTATTTTCCCTTGCTTTAATGATGCATTGAATAATAGGGTGAGACCGTCA
GCAACTTGGTCAGCTGATTCCTTTAGAATACGGGCTCCGATTCCGCCAGG
ACCACTAGCTTTAAAGGGATTCAATTCTTTAAGTAGTTTTGCGACTCCGT
TTTTGGTAACAATGATGTCATTGATCTTTTTTCCTTTAGGGCCTAACGGT
GTTGGGGTTGAACCATCATCTTCTGTGAAGATACTTGTGAATTGGTTATT
TAGAATCTCTGCTAGTTCCTCCTCTTTGGTATGGATTTCGTTGTTTTCCN
GTCTTTGTTGGTACATGTTTGTCCTGCGCATTCGAGATAATTTGCTTGAA
CGTTTCCCAACATTTATCGATGTCTGTTTCTGTAGTGTTTGTTGTGCAAA
AGTTTTGCATACCTTCACCCATATCCTTTTGAAGGCCTTCTATATTTGCT
CGATGCCAAACATAGATCTTGCGTTGGATAGGTTTCGATTTTTGGGGATG
ACAGAAAACATCAGCAAAAACGGCTGTCTCATGGTCACCAAATCCTTCAT
ACGGCTCACATTTGTTAGTAAGACCAGGTCGGTTTGTTAGAATTAGGTCA
AGTATGG Run BLAST on NCBI protein sequence of TCONS_00035224-protein >TCONS_00035224-protein ID=TCONS_00035224-protein|Name=TCONS_00035224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MRRTNMYQQRXENNEIHTKEEELAEILNNQFTSIFTEDDGSTPTPLGPKG
KKINDIIVTKNGVAKLLKELNPFKASGPGGIGARILKESADQVADGLTLL
FNASLKQGKIPTDWKHNLVSPIFKGGNKNRSKAENYRPISLTSVTCKVLE
HIVHSHIINHLEENSCLTDTQHGFRKKRSCETQLLQTIDTLARAINNKEQ
VVSILLDFSKAFDKVCHRKLIIKLKHYGVHGNVLTWVTDFLSHRTQCVVV
RGKSSKNSNVISGVPQGTVLGPLLFLIYINDMPLESKSKIALFADDAYLY
RSIHTQEDCKKLQKDLDELVKWENKWSMEFHPDKCFNLRVTNK Run BLAST on NCBI transcript from alignment at sc0001275:45417..46723 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035224 ID=TCONS_00035224|Name=TCONS_00035224|organism=Clytia hemisphaerica|type=transcript|length=1307bp|location=Sequence derived from alignment at sc0001275:45417..46723 (Clytia hemisphaerica)
CCATACTTGACCTAATTCTAACAAACCGACCTGGTCTTACTAACAAATGT
GAGCCGTATGAAGGATTTGGTGACCATGAGACAGCCGTTTTTGCTGATGT
TTTCTGTCATCCCCAAAAATCGAAACCTATCCAACGCAAGATCTATGTTT
GGCATCGAGCAAATATAGAAGGCCTTCAAAAGGATATGGGTGAAGGTATG
CAAAACTTTTGCACAACAAACACTACAGAAACAGACATCGATAAATGTTG
GGAAACGTTCAAGCAAATTATCTCGAATGCGCAGGACAAACATGTACCAA
CAAAGACNGGAAAACAACGAAATCCATACCAAAGAGGAGGAACTAGCAGA
GATTCTAAATAACCAATTCACAAGTATCTTCACAGAAGATGATGGTTCAA
CCCCAACACCGTTAGGCCCTAAAGGAAAAAAGATCAATGACATCATTGTT
ACCAAAAACGGAGTCGCAAAACTACTTAAAGAATTGAATCCCTTTAAAGC
TAGTGGTCCTGGCGGAATCGGAGCCCGTATTCTAAAGGAATCAGCTGACC
AAGTTGCTGACGGTCTCACCCTATTATTCAATGCATCATTAAAGCAAGGG
AAAATACCCACTGATTGGAAACATAATTTAGTCAGTCCAATCTTCAAAGG
AGGAAACAAAAATAGGTCCAAAGCAGAAAATTATCGACCGATTAGCTTGA
CGTCTGTCACCTGCAAAGTTCTAGAACACATCGTTCATAGCCACATCATC
AACCACCTCGAGGAGAACAGCTGTCTTACAGATACTCAACATGGCTTTCG
CAAGAAAAGATCGTGCGAGACCCAATTGCTTCAAACCATTGATACCCTTG
CTAGAGCTatcaacaacaaagaacaaGTTGTCAGTATTTTACTTGACTTC
AGTAAAGCCTTCGATAAGGTATGCCATCGTAAACTAATTATTAAGCTTAA
ACATTATGGAGTACATGGCAACGTTCTAACTTGGGTTACAGACTTTCTAT
CTCATCGCACCCAATGTGTTGTTGTTCGTGGGAAATCCTCCAAAAACTCA
AACGTCATTTCAGGTGTCCCCCAAGGAACTGTCCTCGGGCCACTGCTATT
CTTAATCTATATTAATGACATGCCACTTgaatcaaaatcgaaaattgcgC
TGTTTGCCGATGATGCATATCTTTACCGCTCAATACACACACAGGAAGAC
TgcaaaaagcttcaaaaagaCCTAGACGAATTGGTAAAATGGGAAAACAA
ATGGTCCATGGAGTTTCACCCAGACAAATGCTTTAACCTCAGAGTCACCA
ACAAACG Coding sequence (CDS) from alignment at sc0001275:45417..46723 >TCONS_00035224 ID=TCONS_00035224|Name=TCONS_00035224|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at sc0001275:45417..46723 (Clytia hemisphaerica)
ATGCGCAGGACAAACATGTACCAACAAAGACNGGAAAACAACGAAATCCA
TACCAAAGAGGAGGAACTAGCAGAGATTCTAAATAACCAATTCACAAGTA
TCTTCACAGAAGATGATGGTTCAACCCCAACACCGTTAGGCCCTAAAGGA
AAAAAGATCAATGACATCATTGTTACCAAAAACGGAGTCGCAAAACTACT
TAAAGAATTGAATCCCTTTAAAGCTAGTGGTCCTGGCGGAATCGGAGCCC
GTATTCTAAAGGAATCAGCTGACCAAGTTGCTGACGGTCTCACCCTATTA
TTCAATGCATCATTAAAGCAAGGGAAAATACCCACTGATTGGAAACATAA
TTTAGTCAGTCCAATCTTCAAAGGAGGAAACAAAAATAGGTCCAAAGCAG
AAAATTATCGACCGATTAGCTTGACGTCTGTCACCTGCAAAGTTCTAGAA
CACATCGTTCATAGCCACATCATCAACCACCTCGAGGAGAACAGCTGTCT
TACAGATACTCAACATGGCTTTCGCAAGAAAAGATCGTGCGAGACCCAAT
TGCTTCAAACCATTGATACCCTTGCTAGAGCTatcaacaacaaagaacaa
GTTGTCAGTATTTTACTTGACTTCAGTAAAGCCTTCGATAAGGTATGCCA
TCGTAAACTAATTATTAAGCTTAAACATTATGGAGTACATGGCAACGTTC
TAACTTGGGTTACAGACTTTCTATCTCATCGCACCCAATGTGTTGTTGTT
CGTGGGAAATCCTCCAAAAACTCAAACGTCATTTCAGGTGTCCCCCAAGG
AACTGTCCTCGGGCCACTGCTATTCTTAATCTATATTAATGACATGCCAC
TTgaatcaaaatcgaaaattgcgCTGTTTGCCGATGATGCATATCTTTAC
CGCTCAATACACACACAGGAAGACTgcaaaaagcttcaaaaagaCCTAGA
CGAATTGGTAAAATGGGAAAACAAATGGTCCATGGAGTTTCACCCAGACA
AATGCTTTAACCTCAGAGTCACCAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035224-exon-sc0001275-1491911889:45417..46723 | TCONS_00035224-exon-sc0001275-1491911889:45417..46723 | Clytia hemisphaerica | exon |
| TCONS_00035224-exon-sc0001275-1510915933:45417..46723 | TCONS_00035224-exon-sc0001275-1510915933:45417..46723 | Clytia hemisphaerica | exon |
| TCONS_00035224-exon-sc0001275-1575043694:45417..46723 | TCONS_00035224-exon-sc0001275-1575043694:45417..46723 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001275 | supercontig | sc0001275:45417..46723 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
BLAST of TCONS_00035224 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.227e-16 Identity = 65/263 (24.71%), Postives = 119/263 (45.25%), Query Frame = -1
Query: 132 VTKNGVAKLLKELNPFKASGPGGIGARILKESADQVADGLTLLFNASLKQGKIPTDWKHNLVSPIFKGGNKNRSKAENYRPISLTSVTCKVLEHIVHSHIINHL------EENSCLTDTQHGFRKKRSCETQLLQTIDTLARAINNKEQVVSILLDFSKAFDKVCHRKLIIKLKHYGVHGNVLTWVTDFLSHRTQCVVVRGKSSKNSNVISGVPQGTVLGPLLFLIYINDMPL--------------ESKSKIALFADDAYLY 860
+T + + ++ L K+ GP G A + +++ L LF + K+G +P + + I K G ++ +K EN+RPISL ++ K+L I+ + I H+ ++ + Q F ++S + I + RA + ++SI D KAFDK+ ++ L G+ G L + T +++ G+ + + +G QG L PLLF I + + + + K++LFADD +Y
Sbjct: 453 ITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPG-RDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKS-----INVIQHINRAKDKNHVIISI--DAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVY 707
The following BLAST results are available for this feature:
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