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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035220 ID=TCONS_00035220|Name=TCONS_00035220|organism=Clytia hemisphaerica|type=transcript|length=2599bpRun BLAST on NCBI transcript from alignment at sc0001275:14249..21478- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035220 ID=TCONS_00035220|Name=TCONS_00035220|organism=Clytia hemisphaerica|type=transcript|length=7230bp|location=Sequence derived from alignment at sc0001275:14249..21478- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00035220 vs. Swiss-Prot (Human)
Match: PYC (Pyruvate carboxylase, mitochondrial OS=Homo sapiens GN=PC PE=1 SV=2) HSP 1 Score: 1121.3 bits (2899), Expect = 0.000e+0 Identity = 546/837 (65.23%), Postives = 667/837 (79.69%), Query Frame = 1
Query: 91 IKTMLRSQLGSLN-RIARAGTEAGIRTVAVYSEQDAKQIHRQKADEAYLIGKGMPPVAAYLNIPEIIKIAKKHDVDAIHPGYGFLSERHDFARACIKNGIKFVGPTPDVIHLMGDKIEARKTAIANNVPVIPGTESPVKSLDEVKEFCEEFGYPIMLKAAYGGGGRGMRVVSCAEDLEKMYDLATSEALAAFGDGSMFIERFIANPRHIEIQVLGDKYGNVVHLFERDCSVQRRHQKVIEIAPAADMSEETRKTLQDCAVRLCESVGYENAGTVEFLLDDQGNHYFIEVNARLQVEHTVTEEITGIDLVRAQIGIAEGQSLEELGLTQDKIKCDGYAIQARITTEDPANNFTPDTGRLEVFRSGEGMGIRLDGASTYSGAVVSPHYDSLLVKVISHAKEHYEAANKLARSLREFRIRGVKTNIPFVLNVLQHPEFLHGSVATDFIFKNPALLDIKPTQNRAHKLSYYLANTIVNGPCTPLATDMLPSKIEPVPPNHKDGRRGVVNKPTGFRDILQTFGPEGLAKAVRRENRLLLTDTTFRDAHQSLLATRVRTHDLLKISPFVAQKFANLFSLECWGGATFDVSMRFLKECPWERLVRLREAIPNIPFQMLLRGANAVGYKNYPDNAVFEFCRLANKHGLDVFRVFDALNYLPNLQLGIDXXXXXXXXXXXXICYTGDLCSPNETKYTIDYYMEIASELVKSGIHILCIKDMAGLLKPDAAALLVGSLRAQYPKLPIHIHTHDTAGAGVASMLACAEAGADIVDCAVDSMSGMTSQPSMGAIVASLQNTESDTELQLSDIGKYNTYWEQTRTLYAPFECTTSMKSGNSDVYLNEIPG 2598
IK ++ + G + R+ RA TE GIRTVA+YSEQD Q+HRQKADEAYLIG+G+ PV AYL+IP+IIK+AK+++VDA+HPGYGFLSER DFA+AC G++F+GP+P+V+ MGDK+EAR AIA VPV+PGT++P+ SL E EF +G+PI+ KAAYGGGGRGMRVV E+LE+ Y A SEALAAFG+G++F+E+FI PRHIE+Q+LGD+YGN++HL+ERDCS+QRRHQKV+EIAPAA + + R L +V+L + VGYENAGTVEFL+D G HYFIEVN+RLQVEHTVTEEIT +DLV AQI +AEG+SL +LGL Q+ I+ +G AIQ R+TTEDPA +F PDTGR+EVFRSGEGMGIRLD AS + GAV+SPHYDSLLVKVI+H K+H AA K++R+L EFR+RGVKTNI F+ NVL + +FL G+V T FI +NP L ++P QNRA KL +YL + +VNGP TP+ PS +PV P G P GFRDIL GPEG A+AVR LLL DTTFRDAHQSLLATRVRTHDL KI+P+VA F+ LFS+E WGGATFDV+MRFL ECPW RL LRE IPNIPFQMLLRGANAVGY NYPDN VF+FC +A ++G+DVFRVFD+LNYLPN+ LG++AAG AGGVVE AI YTGD+ P+ TKY++ YYM +A ELV++G HILCIKDMAGLLKP A +LV SLR ++P LP+HIHTHDT+GAGVA+MLACA+AGAD+VD A DSMSGMTSQPSMGA+VA + T DTE+ + + Y+ YWE R LYA F+CT +MKSGNSDVY NEIPG
Sbjct: 37 IKKVMVANRGEIAIRVFRACTELGIRTVAIYSEQDTGQMHRQKADEAYLIGRGLAPVQAYLHIPDIIKVAKENNVDAVHPGYGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIAIAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAPAAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRHGKHYFIEVNSRLQVEHTVTEEITDVDLVHAQIHVAEGRSLPDLGLRQENIRINGCAIQCRVTTEDPARSFQPDTGRIEVFRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVKTNIAFLQNVLNNQQFLAGTVDTQFIDENPELFQLRPAQNRAQKLLHYLGHVMVNGPTTPIPVKASPSPTDPVVPAVPIG-----PPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPG 868 The following BLAST results are available for this feature:
BLAST of TCONS_00035220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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